Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 369 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 47.4 bits (111), Expect = 6e-10
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 11/175 (6%)

Query: 168 MNTEEEGNVLKACQHLGLNCLHDFIIVAVDTGFRRAELLGLSAPDFQEGMIHLYAGQTKN 227
           ++ EE   +L+A +++    +   I      G RR+E+L L   D       L   Q+K 
Sbjct: 196 LSKEEVKRILEAHKNIKHRTMLSIIYAC---GLRRSEVLHLKISDVDSKRGLLIVRQSKG 252

Query: 228 GDARAIPATSRVARILHR----RRMNLTTFEGLTVSSLRHQWAT---LRAYMGMEEDPQF 280
              R +P + +   +L       R     F G  ++S     +    L++ +G     + 
Sbjct: 253 KKDRVVPLSDKTIALLREYYKYERPQYFLFXGKKLNSKYSSGSLQKILKSALGKSGIKKP 312

Query: 281 I-VHMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQARNALE 334
           + +H LRH+ A+ L++ G  L  +Q  +GH +  TT  Y H+   ++ + ++  +
Sbjct: 313 VTLHWLRHSFATHLLENGTDLRYIQEILGHNSSRTTEIYTHVTDNSIRKIKSPFD 367