Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 294 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 50.1 bits (118), Expect = 8e-11
 Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 24/236 (10%)

Query: 112 ITEMVLEFEDLGNSGSTVNRKLSLLSMVLKTAVNHNWLLSVPRMIRR--KEGKHRIRWMN 169
           I   +++  + G S +TVNRK++ L    K  +    +   P    R  K  K    ++ 
Sbjct: 51  IRAWIVDLVEQGLSATTVNRKMATLRSFYKFLLRSGEITKDPTYKLRALKTSKKLPEFVQ 110

Query: 170 TEEEGNVLKACQH-LGLNCLHDFIIVAVD--TGFRRAELLGLSAPDF--QEGMIHLYAGQ 224
                 +L   ++  G     D +++     TG R +EL+GL+  D   Q   + +Y  +
Sbjct: 111 ESTMDQLLNDLEYEAGFEGQRDKMVMEFLYLTGVRLSELIGLTWKDIDIQGKTVKVYGKR 170

Query: 225 TKNGDARAIPATSR-VARILHRRRMNLTTFEGL--------TVSSLRHQ----WATLRAY 271
            K    R IP T+  +  I+  ++    TF  +        T+S  +      +  +R Y
Sbjct: 171 KKQ---RIIPLTNTLIENIISYKKDFKETFSNVNESDYFIVTISKKQAYPMIIYRIVRKY 227

Query: 272 MGM-EEDPQFIVHMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENL 326
           + +  +  +   H+LRHT A+ L+ +G  L +V+  +GH N+  T  Y H + E L
Sbjct: 228 LDLFAQTSKRSPHLLRHTFATHLLNKGADLNAVKDLLGHANLAATQVYTHNSMEKL 283