Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 388 a.a., phage-related integrase from Agrobacterium fabrum C58

 Score =  150 bits (378), Expect = 7e-41
 Identities = 104/365 (28%), Positives = 171/365 (46%), Gaps = 25/365 (6%)

Query: 5   RKGNRYLVSLGSRNDRYRQTFATEEEAKADEARELARRATLPKAVRGEGTGTISPLKSRK 64
           ++G+ +  ++  +  R+R++FATE EA   E  EL  +A   K +RGE          R+
Sbjct: 4   KRGSSWEGTVTHKGARHRRSFATESEA---ELWELDSKA---KLIRGEPIDMGEKAAKRR 57

Query: 65  -----TLQEAYDLTFRLEWKGGKSEKTMTLNGGNVLKALGADTLLSDITTEAITEMVLEF 119
                TL E     +   W    S     +N   ++  +GA+  ++ +    +     + 
Sbjct: 58  GDLPYTLGELVQHVYETHWAPMPSGAKQLINANLIVAEIGANLPVAKLGKADVDRARSKL 117

Query: 120 EDLGNSGSTVNRKLSLLSMVLKTAVNHNWLLSVPRMIRRKEGKHRIRWMNTEEEGNVLKA 179
              GN+  TVNRK++ LS  L  A +   +   P+  + KE +HR+R    +EE   L  
Sbjct: 118 LAAGNAPGTVNRKVAALSKCLSEAEDLGIIERKPKCNKYKESEHRVRRFTPDEEKKTLAF 177

Query: 180 CQHLGLNCLHDFIIVAVDTGFRRAELLGLSAPDFQEGMIHLY----AGQ-TKNGDARAIP 234
              +G   + D+ ++++DTG R++E+L L   D Q G + ++     GQ TK+G +R +P
Sbjct: 178 FDRIGHQDMADYTVLSLDTGMRQSEVLSLHFEDIQNGRVTVWGVGATGQRTKSGKSRTVP 237

Query: 235 ATSRVARILHRRR---MNLTTFEGLTVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCAS 291
            T+R   +  RRR        F  L+ +S+ H W  L   + +E D QF+ H+LRH   S
Sbjct: 238 LTARAQAVFDRRREYTEGKAVFPSLSKNSVAHYWGRLSEALNLESDKQFVPHILRHEFCS 297

Query: 292 RLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENL------MQARNALEAAPAQPTAFES 345
           RL   G   A++Q   GH  +  T RY HL  + L      M+ +  L    A     + 
Sbjct: 298 RLASNGENAAAIQKLAGHATLLVTQRYVHLFGDELDDVIGRMEKKETLAGNRATTVIVDE 357

Query: 346 VERDT 350
           +E DT
Sbjct: 358 IETDT 362