Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 653 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  325 bits (834), Expect = 3e-93
 Identities = 179/439 (40%), Positives = 261/439 (59%), Gaps = 7/439 (1%)

Query: 116 EKRQLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALA-YSRCEGIS----LAVCMLDLDGF 170
           E  Q  H LQ R   D LTGLPNR    D L  ALA  +R   +     +AV  +DLDGF
Sbjct: 208 ELTQANHELQKRAFTDALTGLPNRVLFEDRLRHALARMNRANQLQVEECIAVLFVDLDGF 267

Query: 171 KAVNDGYGHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQR 230
           K +ND +GH+ GD +L   A+RL    R  D VAR+ GDEF+L+L  V D  +   A  R
Sbjct: 268 KPINDSFGHSAGDRILCVAAERLARNTRESDTVARIGGDEFLLLLEGVHDRAECAEAANR 327

Query: 231 VLRALAAPCVVREHTLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFD 290
           VLRAL  P  V+   L ++ SIG+ L+P+  E  D LV +AD AMY AK+ G   Y +F+
Sbjct: 328 VLRALGEPFNVQGKLLQIACSIGIVLHPEQGEP-DKLVANADAAMYEAKRAGGGNYVMFE 386

Query: 291 VSQEQELKATHQTVARVRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPP 350
                +     Q  + +RRA+   +  LYYQPK+N     + G E L+RW  P  G++ P
Sbjct: 387 SHMGADAAKQLQLQSDLRRAVELKQFELYYQPKINGVGDSISGVEALVRWNHPQHGLIGP 446

Query: 351 GDFLPWVEQTDLIVEIGEWVIGQALSQLQAWQRQGQPWSLSVNIAARHLQRSDFAERLQQ 410
            +F+   E+  LIV +G+W++ +A  Q+  WQ QG    ++VN++   L+  DF  R+++
Sbjct: 447 TEFIGLAERFGLIVHLGDWILDEACRQIAQWQAQGTQMCVAVNLSVMQLREVDFVARVER 506

Query: 411 LLAAYPAVDPALLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKR 470
            L  +  V  +LL  EI ESVA+++++   R L+    +GV  S+DDFGTGYSSLS+L++
Sbjct: 507 ALLRHN-VPASLLLCEITESVAMEDIKATQRTLEGLARVGVFLSIDDFGTGYSSLSHLRK 565

Query: 471 LPTQTIKIDQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCE 530
           LP + +KID+SFV+D+   +D  A+ +AVI LA A G  V+AEG+E+     +L+ +GC+
Sbjct: 566 LPARQVKIDRSFVQDLQTKEDARAVIDAVIRLAHALGLSVVAEGVENEAQRDILLAMGCD 625

Query: 531 LAQGYCIARPMPASDVQAW 549
             QG+  +RP+PA D+  W
Sbjct: 626 ELQGFLFSRPLPAGDLLDW 644