Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1059 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  340 bits (873), Expect = 1e-97
 Identities = 196/539 (36%), Positives = 299/539 (55%), Gaps = 14/539 (2%)

Query: 24   ITYVNQQFCSISGYSREELLGANHRILNS--GLHEPTFFVGMWRALVAGRVWKGEICNRS 81
            I   N+  C ++G+   +L+G     L S   LH    F  +W  L     W+GE+  R 
Sbjct: 524  ILTANRALCRLTGHDLGDLVGEPPEQLMSDGSLH----FADLWPVLDQRGTWQGEVTVRR 579

Query: 82   KDGSLY--WVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHDVLTGLPNR 139
            ++G  Y  W+   +  +V     ++  Y+    DV+++++    +++   HDVLT LPNR
Sbjct: 580  RNGDSYPAWL---VASVVRDGPERISHYIFTSIDVSDRKRSEARIRFLAHHDVLTELPNR 636

Query: 140  AYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVAQRLKSILRG 199
            +   + L  AL  ++ +G  + V  +DLD FK +ND  GH VGD LL  VA R+   +R 
Sbjct: 637  SLCIERLGLALQQAQRKGQRVGVLFIDLDRFKNINDSLGHHVGDALLRSVAARMSQAVRP 696

Query: 200  GDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAA-PCVVREHTLSLSASIGVTLYP 258
            GD V+RL GDEFV++L +V D  ++ + ++R L +L   P  +    + +S S+G+ +YP
Sbjct: 697  GDTVSRLGGDEFVVVLNNVADGQEILSLVERRLISLIRQPHDIDGAEIHVSCSVGIAVYP 756

Query: 259  QDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTVARVRRALRNGELCL 318
             D +D D L+RHAD AMY +K  GR+    F     +  +   Q  + +R A+   EL L
Sbjct: 757  DDAQDIDALMRHADVAMYQSKASGRDTARFFTPEMNERAQQRLQLESSLRHAIERDELSL 816

Query: 319  YYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLIVEIGEWVIGQALSQL 378
            +YQP+++  +G+++  E LLRWQ    G V P  F+P  E++  IV IG WVI QA +Q 
Sbjct: 817  HYQPRIDAHSGELICVEALLRWQSAELGQVRPAQFIPIAEESGQIVAIGAWVIEQACAQH 876

Query: 379  QAWQRQGQ-PWSLSVNIAARHLQRSDFAERLQQLLAAYPAVDPALLDLEIVESVAIDNLQ 437
             AW+R G     +++N++A  L+     E L+  +A Y  V P  L++E+ ES  +D  +
Sbjct: 877  AAWRRDGLGAIRVAINMSALQLRDGGLLEVLRGAIALY-GVSPGDLEIELTESTLMDAAE 935

Query: 438  HVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQSFVRDILHDQDDLALTE 497
                 L A ++LGV  S+DDFGTGYSSL+YL R P   +KID+SF+  +L D  D+A+  
Sbjct: 936  QSLVQLHALKSLGVMLSIDDFGTGYSSLNYLNRFPIDKLKIDRSFIHKMLGDPTDMAIAR 995

Query: 498  AVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARPMPASDVQAWAQAYQQP 556
            A+IGL    G  V+AEG+E  E    L    C+  QGY I+RPMPA  +  W     +P
Sbjct: 996  AIIGLGHTLGLRVVAEGVERREEADTLRAARCDELQGYLISRPMPAGKLAGWIAQASRP 1054