Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  383 bits (983), Expect = e-110
 Identities = 211/534 (39%), Positives = 303/534 (56%), Gaps = 7/534 (1%)

Query: 18   TDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGMWRALVAGRVWKGEI 77
            TD+   I+ VN+ F  I+GYS  E LG   R+L SG H+  F++ MW  L A   W+GEI
Sbjct: 698  TDIDQRISAVNRAFSEITGYSEIEALGQTPRLLASGQHDSAFYLAMWHQLTAEGHWQGEI 757

Query: 78   CNRSKDGSLY--WVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHDVLTG 135
             N+ K+G LY  W+  + V   D    ++  +V++  D++  +     L ++  HD LTG
Sbjct: 758  YNKRKNGELYPSWLTISAVRNSDR---EITHFVAVFADISSIKHAQAKLDYQAHHDPLTG 814

Query: 136  LPNRAYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVAQRLKS 195
            LPNR    + L   L  ++      AV  LDLD FK +ND  GH VGDLLL  +AQRLK 
Sbjct: 815  LPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKE 874

Query: 196  ILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREHTLSLSASIGVT 255
             +R  D VARL GDEF+++L  +           ++L    AP    EH    SASIG++
Sbjct: 875  QVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGIS 934

Query: 256  LYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTVARVRRALRNGE 315
            LYPQD  D  TL+R+AD AMY +K +GRNR   +      +          +RRA+   E
Sbjct: 935  LYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNE 994

Query: 316  LCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLIVEIGEWVIGQAL 375
            + L +QPK++L+T  ++G E L+RW  P  G VPP  F+   E+   I+++G+WV+ QA 
Sbjct: 995  MSLCFQPKLSLKTQSLVGAEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQAC 1054

Query: 376  SQLQAWQRQGQPWS-LSVNIAARHLQRSDFAERLQQLLAAYPAVDPALLDLEIVESVAID 434
             Q+QAW++  QP+  LS+N+A   L+    A R++QLL  +  +    L LEI E+  + 
Sbjct: 1055 RQMQAWKQHYQPFGPLSINLAGAQLRHPHLARRIEQLL-KHHQLKAGDLQLEITENFIMS 1113

Query: 435  NLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQSFVRDILHDQDDLA 494
              +     L   + LGV+ ++DDFGTGYSSLSYLKRLP   +KID+SF+R +  D  D A
Sbjct: 1114 QAEEALAVLYQLKKLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAA 1173

Query: 495  LTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARPMPASDVQA 548
            +  A+I L R+    +IAEG+E+    R L   GCE  QGY ++ P+P  +  A
Sbjct: 1174 IARAIIALGRSMQLTIIAEGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAA 1227



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 27/132 (20%)

Query: 5   YRAAVDAAAIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGMW 64
           + A+ D   +  ++D  G +  VN+ FC ++GY            LN  + + +  +G+W
Sbjct: 567 FHASPDGLLLSRQSD--GLLLEVNEGFCRLTGYD-----------LNPTIDQTSLDLGIW 613

Query: 65  RALVAGRVWKGEI----------CN-RSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFD 113
             L   +    ++          C+ R  DG +   + +  PL  P+TG V   ++I  D
Sbjct: 614 VDLNERKRLVDQLNRDGFVRDFTCHIRRSDGQIRLCELSARPL--PITG-VDCMLTIARD 670

Query: 114 VTEKRQLLHTLQ 125
           +TE+  +   LQ
Sbjct: 671 ITERHLMQEKLQ 682