Pairwise Alignments

Query, 330 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 325 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

 Score =  131 bits (330), Expect = 2e-35
 Identities = 89/263 (33%), Positives = 126/263 (47%), Gaps = 30/263 (11%)

Query: 73  VTVPGLR--VLIIPPSLESAPQAELLERHRAPLCLLHGRGTVLASVCIGVFFIAASGLLD 130
           V VP  R      PP+L  A QA             H RG  +  +C+G F +A +GLLD
Sbjct: 76  VVVPSWRDDCAAAPPALIRALQAA------------HRRGATVVGLCLGAFVLAEAGLLD 123

Query: 131 GRPACTHWNYVHALAQRFPRVRVEAQQPLLDDGDIVTSAGLMAWTDLGLRLLERFLGTTV 190
           GRPA THW    A A+++P+VR++ +   +DDG ++TSAG  A  D  L LL    G   
Sbjct: 124 GRPATTHWKLAPAFARQYPKVRLQPEVLYVDDGSVLTSAGTAAGIDCCLHLLRVRHGAET 183

Query: 191 AQETARYLAVDP---------VAAPLPGAVFNPRLDHGDEAVLKVQHWLQGNGGQDADLA 241
           A   AR + V P         +  P+P      RL         +  WL  +  +  +L 
Sbjct: 184 ANRAARRMVVAPHRQGGQAQYIEQPVPATGERDRL-------APLLEWLGKHLDKPHELD 236

Query: 242 TMAACAGLEARTFLRRFRAATGLRPTEYCQQVRVGRACRLLEFTRRTVEQIAWGVGYQDP 301
            +A  A +  R F RRFR +TG    ++ Q  R+  A RLLE T   VE++A G G+   
Sbjct: 237 DLARRALMSRRNFTRRFRESTGTTVGQWVQNQRLALAQRLLETTDEPVERVATGAGFGSA 296

Query: 302 GAFRKVFQRVIGLTPSDYRRRFA 324
            + RK F     ++P  YRR+F+
Sbjct: 297 VSLRKHFLSAFKVSPMAYRRQFS 319