Pairwise Alignments

Query, 330 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 324 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

 Score =  142 bits (359), Expect = 9e-39
 Identities = 105/324 (32%), Positives = 160/324 (49%), Gaps = 14/324 (4%)

Query: 9   ANLDIGLLLYPGVQRAAVHGLADLFLVAN-RVAAELGAVELPHIRVSCWQADETGQLLP- 66
           A   I +L  PGVQ   V G  D+F  AN +  A+   + +   +    ++    +L+P 
Sbjct: 3   ATKTIAILAMPGVQLLDVSGPLDVFAEANLQAKAQAYRLLVVASKRGPVRSSSGVRLMPD 62

Query: 67  ASDNSAVTVPGLRVLII--PPSLESAPQAELLE--RHRAPLCLLHGRGTVLASVCIGVFF 122
           A+   A+  P   +L+   P + ++A  A +    + + P     G      SVC G F 
Sbjct: 63  ATIGDAMHEPIHTLLVAGSPHAADAASDANVSAWLKQQTPKLRRFG------SVCSGAFV 116

Query: 123 IAASGLLDGRPACTHWNYVHALAQRFPRVRVEAQQPLLDDGDIVTSAGLMAWTDLGLRLL 182
           +A +GLL+GR   THW     LA+ +P V V+A    + DG + T+AG+ A  DL L L+
Sbjct: 117 LAQAGLLNGRRVTTHWAVAEQLARDYPSVTVDADAIHVRDGRLRTAAGVTAGLDLSLALV 176

Query: 183 ERFLGTTVAQETARYLAV--DPVAAPLPGAVFNPRLDHGDEAVLKVQHWLQGNGGQDADL 240
           E  LG  +A + A  L +        +  +        G  A+ +VQ W+  N  QD  +
Sbjct: 177 EEDLGRDIAMKVAAQLVMFFKRPGGQMQFSRKGEAAPTGRSALQEVQRWIAANPAQDHGV 236

Query: 241 ATMAACAGLEARTFLRRFRAATGLRPTEYCQQVRVGRACRLLEFTRRTVEQIAWGVGYQD 300
           A +AA  GL  R F R FR   G+ P  + + VRV  A RLLE      +Q+A+  G+ D
Sbjct: 237 ANLAARMGLSERHFARLFRQEVGVTPAAWVEDVRVTAARRLLEAGDAAPKQVAFQCGFAD 296

Query: 301 PGAFRKVFQRVIGLTPSDYRRRFA 324
               R+ FQR +G+TP++YR+RFA
Sbjct: 297 ADTLRRAFQRHVGITPAEYRKRFA 320