Pairwise Alignments

Query, 330 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 320 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

 Score =  116 bits (291), Expect = 7e-31
 Identities = 93/314 (29%), Positives = 143/314 (45%), Gaps = 15/314 (4%)

Query: 11  LDIGLLLYPGVQRAAVHGLADLFLVANRVAAELGAVELP----------HIRVSCWQADE 60
           + I +L   GV    +  + D+F  AN +AA L     P           +R +   A  
Sbjct: 1   MKIDVLALDGVFDTGLSTVLDVFTTANELAAMLQLDVAPFEVVVAGMRKRVRTAQGFAVP 60

Query: 61  TGQLLPASDNSAVTVPGLRVLIIPPSLESAPQAELLERHRAPLCLLHGRGTVLASVCIGV 120
             + L A     + VP L   + P +LE A Q   +    + L     +G  +A+ CIG 
Sbjct: 61  VARTLEAGAADWLIVPALGCKM-PETLEPALQRADVRDACSALRERTSKGAHIAAACIGT 119

Query: 121 FFIAASGLLDGRPACTHWNYVHALAQRFPRVRVEAQQPLLDDGDIVTSAGLMAWTDLGLR 180
           F +A +G+LD + A T W       QR+P V++E  + L+    +VT+   ++  D+ L 
Sbjct: 120 FVLAEAGVLDHQKATTTWWLATLFRQRYPAVQLEDSRMLVSSSHLVTAGAALSHVDMALW 179

Query: 181 LLERFLGTTVAQETARYLAVDPVAAPLPGA-VFNPRLDHGDEAVLKVQHWLQGNGGQDAD 239
           ++ R     +A   ARYL VD  + P   A V +  L H D  V + + W +G       
Sbjct: 180 IV-RQASPELATLVARYLIVD--SRPSQSAYVISDHLSHSDPLVERFERWARGRLALGFS 236

Query: 240 LATMAACAGLEARTFLRRFRAATGLRPTEYCQQVRVGRACRLLEFTRRTVEQIAWGVGYQ 299
           L   A  AG   RT  RR +   G  P  Y Q +RV RA  LL+ + +++EQIA  VGY 
Sbjct: 237 LDEAAQAAGTSKRTLARRMQQVLGKSPLSYVQDLRVERAVHLLKTSDKSLEQIAGMVGYA 296

Query: 300 DPGAFRKVFQRVIG 313
           D    R + ++ +G
Sbjct: 297 DGVTLRTLLRQRLG 310