Pairwise Alignments

Query, 375 a.a., short-chain acyl-CoA dehydrogenase from Pseudomonas putida KT2440

Subject, 384 a.a., Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) from Variovorax sp. SCN45

 Score =  319 bits (817), Expect = 9e-92
 Identities = 175/374 (46%), Positives = 238/374 (63%), Gaps = 3/374 (0%)

Query: 3   VNDEQQQIADAVRAFAQERLKPFAEQWDKDHRFPKEAIDEMAELGLFGMLVPEQWGGSDT 62
           +++EQ   A   R FAQ    P A QWD +  FPKEAI +  ELG  G+  PE+ GG   
Sbjct: 5   LSEEQNAFAQTARDFAQAEFAPHAAQWDAEAFFPKEAIAKAGELGFCGLYAPERIGGLGL 64

Query: 63  GYVAYAMALEEIAAGDGACSTIMSVHNSVGCVPILRFGNEQQKEQFLTPLATGAMLGAFA 122
             +  A+  EE+AA D + +  +++HN    + +  +  +   +Q+   L +G  L ++ 
Sbjct: 65  PRLDSALVFEEMAAVDPSTTAFITIHNMATWM-LGTWATDAVAQQWGEELTSGRKLASYC 123

Query: 123 LTEPQAGSDASSLKTRARLEGDHYVLNGSKQFITSGQNAGVVIVFAVTDPEAGKRGISAF 182
           LTEP AGSDA SLKTRA L+G  YV+NG K FI+   +  V+++ A T   AG  GISAF
Sbjct: 124 LTEPGAGSDAGSLKTRAELQGAEYVINGGKAFISGAGSTDVLVLMARTGG-AGASGISAF 182

Query: 183 IVPTDSPGYQVARVEDKLGQHASDTCQIVFDNVQVPVANRLGAEGEGYKIALANLEGGRI 242
            VP D+PG    + E K+G ++  T  I FDNV++P  N LG EGEG++IA+  L+GGRI
Sbjct: 183 AVPADAPGISYGKKEHKMGWNSQPTRTINFDNVRIPAQNLLGKEGEGFRIAMKGLDGGRI 242

Query: 243 GIASQAVGMARAAFEVARDYANERQSFGKPLIEHQAVAFRLADMATKISVARQMVLHAAA 302
            IA+ +VG A+ A + AR Y +ERQ FGKPL   QA+ F+LADMAT++  ARQMV  AA+
Sbjct: 243 NIATCSVGAAQGALDAARRYLHERQQFGKPLASFQALQFKLADMATELVAARQMVRLAAS 302

Query: 303 LRDAGR-PALVEASMAKLFASEMAEKVCSDALQTLGGYGYLSDFPLERIYRDVRVCQIYE 361
             DAG   A    +MAK FA++    VC+DALQ  GGYGYLS+FPLER+ RD RV QI E
Sbjct: 303 KLDAGHADASTYCAMAKRFATDAGFNVCNDALQLHGGYGYLSEFPLERLVRDARVHQILE 362

Query: 362 GTSDIQRMVIARNL 375
           GT++I R+++AR L
Sbjct: 363 GTNEIMRVIVARKL 376