Pairwise Alignments

Query, 340 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 332 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  189 bits (479), Expect = 1e-52
 Identities = 113/326 (34%), Positives = 176/326 (53%), Gaps = 1/326 (0%)

Query: 6   TISMQLVREALLQTCPAGEPDSGLLARAGIAVEQLHLPEARVSAESYARLWRLLARRCND 65
           TI+    R AL     AG   SGLL + GI  E L  P AR++ E + RL ++L    +D
Sbjct: 5   TIASHYARAALGGARRAGYDYSGLLQQVGITPELLTEPRARIAPEQFTRLLQMLWLALDD 64

Query: 66  EFFAMDTRGLCSGSLAFMCRASMGQPTLGAGLETSLAFLSLMLQDMQPSLVRQQGLAEIV 125
           E+          G+ A MC A +   TL   LE  L F SL  Q  +  L R+  +A + 
Sbjct: 65  EYLGFADGPSKRGTFAMMCHALIHCRTLEKALERGLLFYSLFPQGPRWQLTREGEMARLS 124

Query: 126 INEPRDEPRRAFTYFTFWMIVHGVTCWLAGRRIPILSIDLRCAEPPFCDDYRVMFSENLH 185
           +++ +      F      +I H +  WL G+RI +        +P    +Y ++F     
Sbjct: 125 LDDSQLWDPEHFLSECLLVIWHRLGSWLIGQRIRLHQATFSYPQPAHASEYDLLFPCAQV 184

Query: 186 FERPRTRMIIASQYLDLPLRRSEEELQRFLAEAPGNILVKYRDPASLGRRIRTDLLRLAP 245
           F  P + ++  ++YL+LPL + E  L+ FL  +P ++L +  +  SL  ++R  LL    
Sbjct: 185 FGAPNSSLVFPARYLNLPLLQDERTLKHFLERSPADLLSRPDEGDSLSSQLRR-LLSRDR 243

Query: 246 EQWPDADRLARQLCLSPSTLRRRLAEEGQNYQGLKDSVRRELAIAWLSQEDVAMGELAER 305
             WPD + +A+ L +SP TLRR L EEG ++Q LKD +RR++AI  L + D+++ E+AE+
Sbjct: 244 SPWPDLEAVAQHLHISPQTLRRHLREEGTSFQALKDELRRDIAIYHLGRADLSLQEIAEQ 303

Query: 306 LGFADSSSFYKAFRKWFGCNPGHYRA 331
           LGF++ S+F++AF+KW G  PG YRA
Sbjct: 304 LGFSEPSAFHRAFKKWTGLTPGAYRA 329