Pairwise Alignments

Query, 362 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 347 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Magnetospirillum magneticum AMB-1

 Score =  122 bits (305), Expect = 2e-32
 Identities = 88/320 (27%), Positives = 159/320 (49%), Gaps = 17/320 (5%)

Query: 8   LCLLSLVLALPLQAEEKVVNLYSWADYVAPQTLQRFEQETGYKVRYDTFDTPEVLETKLL 67
           L LL L+L +   A    + + + + Y++P+ L++FE+E+G  V          +   L 
Sbjct: 5   LLLLGLLLLISAGAMASELRVLTRSSYLSPELLRKFERESGITVNLTVMADHAQVMAALT 64

Query: 68  TGGSGYDVVVPSSTVLARALKAHALQPLDAQAMPGYGNLDKDLLGKLAEVDPGNRHAVPY 127
            G SGYD+       +   ++   ++ + A  + G+ N++     +    DP N + +P+
Sbjct: 65  GGRSGYDIAFSPDYHVGELIRGGLIERVLADRLNGFWNVEDPWRSR--SFDPRNEYTIPH 122

Query: 128 TWGTLGLGVNVEAVRQRLGDVPLDSLDLLFKPEYATRLKGCGIALPDSPQEVIGVALNYL 187
            WGT    V+    R   GD+  DSL LLF+P      +   IAL D  +E++ +AL YL
Sbjct: 123 QWGTAAFAVDTSIHR---GDI--DSLRLLFEPPPEVEGR---IALLDE-EEMLQMALVYL 173

Query: 188 GKDPYSQNKDDLAAAQNLLSQLQPSISYVANGRQINDLANGSVCLALTYNGDAAMAADQA 247
           G+   + +   L  A  +L  +      +   R +  LA+ ++ L +T+NGDA  A ++ 
Sbjct: 174 GEARCTADDGKLEKAARILEPMVARNRLIPAERVMAALADPAMVLVVTWNGDAMRAREK- 232

Query: 248 RRAGKPFEVIYRIPREGTLVWQDNLVIPKDAPHPEAARAFIAFMLKPESVAALTNTLFFA 307
               +P  + Y  PREG LVW D +V+P++ P+   A  F+ FML+PE+ A  ++   +A
Sbjct: 233 ----RP-SLAYAYPREGNLVWTDVVVVPRNPPNRANAMKFLTFMLQPENAALDSSFNGYA 287

Query: 308 NANQAATPLVDEAVRNDPDI 327
           +  + +   +  +V   P++
Sbjct: 288 SMIRGSERFLAPSVLTAPEL 307