Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 319 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 80/228 (35%), Positives = 106/228 (46%), Gaps = 33/228 (14%)

Query: 179 LVAAVAGWQQAPILL----ADYHTAVGERQVITLTDGTRVTLNSASALSVAFSEHERRVV 234
           LVAA AG    P  L    AD+ T+  E + ITL D T VTL   SA+  AF+  +RRV 
Sbjct: 89  LVAAGAGAALGPDFLLRLRADHVTSTAELRQITLADTTAVTLGPDSAIRSAFTSAQRRVE 148

Query: 235 LDAGEALFETADDS-RPFVVETAGARVQGNAATFSVQRDGHVV---LARGEAKVGEHELA 290
           L AG A FE A D+ RPF V   G         F V  DG  V   +  G  +V    LA
Sbjct: 149 LLAGMAFFEVAPDAARPFEVTADGVTATALGTAFDVGLDGGFVTLAVDHGRVRVEGPGLA 208

Query: 291 VA------ADA------------------GTQMAWQRGKLIFNGKPLGQVLTELERYRHG 326
           +A      AD                   G   +W+ G L+   +P+  V+  + R++ G
Sbjct: 209 LAQRVVLGADGWLSFDQRTLGVEKGARAPGGVASWRDGMLMAEREPIAAVVARIARWQAG 268

Query: 327 RIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYGLKVTYL-PWLAVV 373
           R+V+ D  L A  +SGVFDL  P A L  +    G KV  + PWL ++
Sbjct: 269 RVVILDPGLGAQRISGVFDLRNPRAALDAVVHPRGGKVRQISPWLTLI 316