Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 331 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  101 bits (252), Expect = 3e-26
 Identities = 94/295 (31%), Positives = 134/295 (45%), Gaps = 53/295 (17%)

Query: 106 ARERLQILDQALLQLPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRG 165
           A  +L +LDQ        AR ALL +R EG+ Q+   ++LG   + VA  IG AL     
Sbjct: 50  AWRQLGMLDQRFSVASGPARAALLQSR-EGIRQR--VRKLGSGLASVALVIGLAL----- 101

Query: 166 RLKQAGVAASVVLLVAAVAGWQQAPI--LLADYHTAVGERQVITLTDGTRVTLNSASALS 223
                             AG +  PI   LAD  TA GE++ + L+DGT + LN+ SA+ 
Sbjct: 102 -----------------FAGERYVPIHYWLADQRTATGEQRTLKLSDGTLINLNTHSAID 144

Query: 224 VAFSEHERRVVLDAGEALFETA-DDSRPFVVETAGARVQGNAATFSVQRDG--------- 273
           V F E  R VVL  GE L ET  +D RPF V+T    ++     F V+R+          
Sbjct: 145 VRFDEKRRLVVLQEGEILVETGHNDERPFYVQTRDGSLRALGTRFIVKREDDATRLSVLQ 204

Query: 274 HVVLARGEA-------KVGEHELAVAADAGTQM-------AWQRGKLIFNGKPLGQVLTE 319
             V A+ EA       K G+  L  +   G  +       AW RG L+ +   LG+V+ E
Sbjct: 205 SAVAAQPEALHQEQVFKEGQQVLMRSDGLGPLLAVTPATDAWTRGMLVVDNARLGEVVEE 264

Query: 320 LERYRHGRIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYGLKV-TYLPWLAVV 373
           L RYR G + + D  +A + ++G F L +    L  L     + +  + PW   V
Sbjct: 265 LSRYRTGYLGV-DKNVADLRITGSFPLHDTTLALNALLPTLPVHIEQHTPWWVTV 318