Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 316 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 90.9 bits (224), Expect = 4e-23
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 27/225 (12%)

Query: 170 AGVAASVVLLVAAVAGWQQAPILLADYHTAVGERQVITLTDGTRVTLNSASALSVAFSEH 229
           AGV A V L +   +G        A++ T VGE + + L DG+ + LNS + ++V + + 
Sbjct: 84  AGVIA-VALGLGLFSGLDHPKPYSAEFSTGVGEHRQVALPDGSVMDLNSRTVVAVQYEKG 142

Query: 230 ERRVVLDAGEALFETADD-SRPFVVETAGARVQGNAATFSVQRDG---HVVLARGEAKVG 285
            R V L  GEA+F    D SRPFVV     +V      F V+RD     V++  G  KV 
Sbjct: 143 RRGVELKQGEAMFSVEHDTSRPFVVAAGAGQVTVTGTRFDVRRDEGQTRVMVEAGTVKVQ 202

Query: 286 ----EHELAVAADAGTQM------------------AWQRGKLIFNGKPLGQVLTELERY 323
               ++ + + A  GT +                  AW+ GKL+FN   LG+V  E+ RY
Sbjct: 203 GDSPDNLVTLTAGLGTHVDNKGSVAAAYTVNTEELTAWRTGKLVFNNALLGEVAREVSRY 262

Query: 324 RHGRIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYGLKVTYLP 368
           R   + +S   +  + ++ VF  ++ +ALL+ L     + +  LP
Sbjct: 263 RERPLRVSTPAVGNLRLTSVFKANDTDALLKALPHILPVALRTLP 307