Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 92.4 bits (228), Expect = 8e-24
 Identities = 58/151 (38%), Positives = 93/151 (61%), Gaps = 3/151 (1%)

Query: 13  FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAID 72
           +++H+  L  +L RR+ DR+ AADVAQ+T+L+L+ +  +      +RS++ ++A NL ID
Sbjct: 15  YRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLL-VSGRFPGDKESRSYLAQIARNLVID 73

Query: 73  ALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLNR 132
             RR  RI  ++ +S         +P+ E   L  E L  +D  L ++PDN RQA LL++
Sbjct: 74  QWRR-LRIERAYLESIAHLPEP-ESPSLETRALILETLMQIDAMLDRMPDNVRQAFLLSQ 131

Query: 133 VEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163
            EGL+  Q+A+RLGV+ S V KY+ +A+  C
Sbjct: 132 FEGLSYAQIAERLGVTVSSVQKYMTRAIVAC 162