Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 325 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 94/315 (29%), Positives = 143/315 (45%), Gaps = 53/315 (16%)

Query: 96  PAPAPEAALLARERLQILDQALLQLPDNARQALLLN-------RVEGLTQKQV------- 141
           P PA E A LA   L      L   P    QA            VE   Q QV       
Sbjct: 5   PTPAQEQAALAWLSL------LHDQPSGGDQATFSQWLRADPAHVEAYAQAQVLWELSEV 58

Query: 142 -AQRLGVSESMVAK-YIGQALRHCRGRLKQ----AGVAASVVLLVAAVAGWQQAPILL-- 193
            A++L   E++V + Y+       R R+ +      +AA ++L+V    GWQ +  +   
Sbjct: 59  PARKLADEEALVLQGYLNAMNPSKRSRVARWSGALAMAACLLLMVFMGVGWQPSRWVDDF 118

Query: 194 -ADYHTAVGERQVITLTDGTRVTLNSASALSVAFSEHERRVVLDAGEALFETADDSRPFV 252
            ADY TA GE + +TL D ++VTL++ SA++V F++ ER + L  G   F      + FV
Sbjct: 119 GADYVTAPGEVKTVTLADQSQVTLDADSAIAVDFTQGERHIQLRRGAGFFSVTHTGQSFV 178

Query: 253 VETAG--ARVQGNAATFSVQRDG-HVVLARGE-----AKVGEHELAVAA----------- 293
           VE     ARV G      +Q  G  V +  G      +K G+ ++  A            
Sbjct: 179 VEAGSGEARVLGTQFEVRLQPAGAEVTVLSGRVGVTPSKQGQQQILTAGQQVAYAEGVAD 238

Query: 294 -----DAGTQMAWQRGKLIFNGKPLGQVLTELERYRHGRIVLSDSKLAAMEVSGVFDLDE 348
                D+ +++AW+ G L +   PL  V+ +LERY  GRI+L + ++ A  VSG F   +
Sbjct: 239 ALHAVDSESRLAWRDGWLNYYKAPLSDVVKDLERYYPGRILLLNKEMGAKRVSGSFPSKD 298

Query: 349 PEALLRTLEQRYGLK 363
           P+A+L  L+   G +
Sbjct: 299 PQAVLNALQAVLGFE 313