Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 99.8 bits (247), Expect = 6e-26
 Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 9/172 (5%)

Query: 13  FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAID 72
           F  +Y +LL FL R + D+  AAD+ QE+Y +++   +    ++  R+ ++R A NL ID
Sbjct: 2   FTRYYRELLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDPRALLYRTARNLLID 61

Query: 73  ALRREQ-RIAA------SHDDSDGACEVACP-APAPEAALLARERLQILDQALLQLPDNA 124
             R +Q R AA      + +D +   ++A P A  PE A+ +R+ +Q L   + +LP   
Sbjct: 62  RHRHDQVRRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVRC 121

Query: 125 RQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRL-KQAGVAAS 175
           RQA +L++ EGL+  +VA+ +G++  MV K+I   L+ CR  L +QAG AA+
Sbjct: 122 RQAFMLHKFEGLSHAEVAEEMGITVKMVEKHIKMGLQACRACLEQQAGTAAA 173