Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 326 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 6e-26
 Identities = 78/224 (34%), Positives = 109/224 (48%), Gaps = 30/224 (13%)

Query: 166 RLKQAGVAASVVLLVAAVAGWQQA---PILLADYHTAVGERQVITLTDGTRVTLNSASAL 222
           R+    +AA +VL V    GW        L ADY +    RQVI L D ++VTL++ SA+
Sbjct: 91  RVAGLALAACLVLAVGVAGGWHPGYWLQDLQADYSSTGQIRQVI-LADQSQVTLDAGSAI 149

Query: 223 SVAFSEHERRVVLDAGEALFETADDSRPFVVETAGARV-----------QGNAATFSVQR 271
           +V F++ ERRV L  G A FE      PF+VE AG  V           QG  A  +V R
Sbjct: 150 AVDFAQGERRVRLLHGAAFFEVTHTGEPFLVEAAGGEVRVLGTQFEVREQGEGAQVTV-R 208

Query: 272 DGHVVLARGEAKVGEHELA--------------VAADAGTQMAWQRGKLIFNGKPLGQVL 317
            G V ++  +  V     A              +A D+  ++AW++G L +   PL QV+
Sbjct: 209 SGRVGVSPAQGTVARELTANQQLTYRAGRVGDTLAVDSDNRLAWRQGWLNYYQVPLAQVI 268

Query: 318 TELERYRHGRIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYG 361
            +L RY  GRI+L D  L   +VSG F + EP   L +L +  G
Sbjct: 269 DDLGRYYPGRILLLDGDLGQRKVSGSFPVAEPLLALDSLGKVMG 312