Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 351 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 93/317 (29%), Positives = 141/317 (44%), Gaps = 39/317 (12%)

Query: 96  PAPAPEAALLARERLQILDQAL-----LQLPD----NARQALLLNRVEGLTQKQVAQRL- 145
           PAP P  A     R + +D+AL     LQ  D     A +A L    E       A+ L 
Sbjct: 36  PAPRPSPAR-PDARARAMDEALDWLVRLQCADAADTQAFEAWLSAAPENAEAYVEAEALW 94

Query: 146 -GVSESMVAKYIGQALRHC-RGRLKQ--AGVAASVVLLVAAVAGWQQAPILLADYHTAVG 201
            G     VA ++ Q  R   RGRL+     +A + +LLV           L AD+ T VG
Sbjct: 95  NGTPLHKVATHMHQQQRRSWRGRLRSHWKPLATAALLLVGLFTVGNLPMRLQADHLTVVG 154

Query: 202 ERQVITLTDGTRVTLNSASALSVAFSEHERRVVLDAGEALFETADDSR-PFVVETAGARV 260
           ERQ + L DG +V LN+ SA +    +  +   L  GEA F+  + ++ P  VE    R 
Sbjct: 155 ERQRLQLEDGAKVLLNTNSAFASERQDGRQVARLLQGEAYFQVPEGAQLPLEVEAGPLRA 214

Query: 261 QGNAATFSVQR---DGHVVLARGEAKV-GEHELAVAADAGTQ------------------ 298
           Q     F+V+    +  V + RG+  + GE +  +   AG                    
Sbjct: 215 QVRDTDFAVRYLDGEAQVRVQRGDVDLQGERDQRIRLSAGDSISVGPQGFGQRQRPDMHK 274

Query: 299 -MAWQRGKLIFNGKPLGQVLTELERYRHGRIVLSDSKLAAMEVSGVFDLDEPEALLRTLE 357
            +AW  G+L+F   PL QVL E++RY  G I+  +++L  + V+G + LD+P   LR L 
Sbjct: 275 DLAWIDGRLVFENCPLSQVLAEVQRYYPGWIINRNAQLEHVAVTGNYRLDQPLETLRALA 334

Query: 358 QRYGLKVTYLPWLAVVH 374
                ++   P L +++
Sbjct: 335 HITSAQLHEYPALVILN 351