Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 321 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score = 90.9 bits (224), Expect = 4e-23
 Identities = 84/289 (29%), Positives = 123/289 (42%), Gaps = 51/289 (17%)

Query: 120 LPDNARQALLLNRVEGLTQK------QVAQRLGVSESMVAKYIGQALRHCR----GRLKQ 169
           L ++ R  L  + VE + Q+      Q  Q   V +S+      +  RH R    G L  
Sbjct: 38  LNEDTRHRLAWSYVENINQRFGGLSGQAEQARQVFDSV------RRDRHSRRAVLGSLCV 91

Query: 170 AGVAASVVLLVAAVAGWQQAPI-----LLADYHTAVGERQVITLTDGTRVTLNSASALSV 224
           AGVA      V    GWQ+  +       A Y T +GE + +TL DG+++ LN  +AL V
Sbjct: 92  AGVAG-----VLGWGGWQRGWVDSPRAWFATYRTGLGEVRPVTLADGSQLWLNGGTALDV 146

Query: 225 AFSEHERRVVLDAGEALFETADDSRPFVVETAGARVQGNAATFSVQRDG----------- 273
            F E  R++ L  GE L E+  D RP  V T   RVQ     FSV+  G           
Sbjct: 147 QFDEGSRQLRLYRGEILIESGKDPRPLSVVTRAGRVQPLGTRFSVRDQGLQTTLSVFAGA 206

Query: 274 ----------HVVLARGEAKVGEHELAVAADAGTQMA--WQRGKLIFNGKPLGQVLTELE 321
                        L  G+  V + +   A     ++   W RG L+    PL Q++  L 
Sbjct: 207 VQATCSGSGRQTTLQAGQMMVFDAQQVGAPSTAQRLREDWSRGVLVAEDMPLVQMIDILR 266

Query: 322 RYRHGRIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYGLKVT-YLPW 369
            YRHG + + D  + ++   G F L + +  L  LE+   ++V   LPW
Sbjct: 267 DYRHGHLGI-DPAIGSLRAVGTFPLLDTDRALAMLERALPIRVVRTLPW 314