Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 311 a.a., transmembrane sensor from Agrobacterium fabrum C58

 Score =  117 bits (293), Expect = 4e-31
 Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 22/211 (10%)

Query: 170 AGVAASVVLLVAAVAGWQQAPILLADYHTAVGERQVITLTDGTRVTLNSASALSVAFSEH 229
           A  AA V ++++ +        +LADY T VGE++ + L DG+   L+  + LS+ +S  
Sbjct: 84  AAGAAGVGVVLSELGFLPSVDAMLADYATGVGEQRTVELVDGSTAILDGGTTLSLDYSPS 143

Query: 230 ERRVVLDAGEALFETADDS-RPFVVETAGARVQGNAATFSVQR----------DGHV-VL 277
            R +VL +G A+F+   D+ RPFVV  A         +FSV+           +GH+ V 
Sbjct: 144 SRHLVLTSGAAVFDVVHDAARPFVVTAANGDTTATGTSFSVKHGEEDVSIECLEGHITVQ 203

Query: 278 ARGEAKVGEHE----------LAVAADAGTQMAWQRGKLIFNGKPLGQVLTELERYRHGR 327
             G++++   E            VAAD  T  AW+RG LIF  +PL  V+++L R+R GR
Sbjct: 204 CLGDSQLNGGEGISYSRAGLGKKVAADIETAAAWRRGLLIFEDRPLADVVSDLNRHRRGR 263

Query: 328 IVLSDSKLAAMEVSGVFDLDEPEALLRTLEQ 358
           +V++ S L +  +SGVF L+ P+ +L  LE+
Sbjct: 264 VVIASSDLRSRRMSGVFHLNRPDEILAHLEE 294