Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1196 a.a., transcription-repair coupling factor from Rhodanobacter sp000427505 FW510-R12

 Score = 1271 bits (3289), Expect = 0.0
 Identities = 656/1185 (55%), Positives = 842/1185 (71%), Gaps = 51/1185 (4%)

Query: 2    SVLRLPQMSATAGKQTWGNLP-GAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF 60
            S ++ P +  T  ++ +   P G+A +L +AEAA S     +++  D+Q A  LE EL+ 
Sbjct: 3    SPIKHPPLPTTPKQRRYWTPPHGSARALLLAEAARSHEGLLVVVARDTQRAQALEAELKI 62

Query: 61   FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPT 120
            FA  LPVL FPDWETLPYD FSPH +I+SQRIA+LYRLP +  G+LVVP+ T + R+AP 
Sbjct: 63   FAGGLPVLHFPDWETLPYDAFSPHPEIVSQRIATLYRLPGVKRGVLVVPVATLMQRIAPR 122

Query: 121  RFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY 180
              + GS LVL  GQ +D+   + RLEASGYR V  V E G+FAVRGAL+D+FPMG+  PY
Sbjct: 123  SHITGSGLVLAKGQKLDLATEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPY 182

Query: 181  RIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR 240
            RI+LFD+E+E++R+FDPETQRS   VD V LLPAREFP+  E    F+   RERF +D R
Sbjct: 183  RIELFDDEVESIRSFDPETQRSQQPVDKVELLPAREFPLTGEAAKLFRGNLRERFPIDVR 242

Query: 241  RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRG 300
               ++QD+  G+ P GIEYYLPLFFE+T+TLFDYL  D       G  +AA+ FW     
Sbjct: 243  HCPLYQDMKEGVTPGGIEYYLPLFFEQTATLFDYLADDALFVLGEGAGEAADQFWVQTAE 302

Query: 301  RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNL 360
            RY+ R  D+ RP+LPPAEL+LP E    +L +  RV V     E  +     PA   P L
Sbjct: 303  RYDQRAHDIERPVLPPAELYLPPEKLREQLNKRLRVEVVEPGHEHAIDTGTQPA---PEL 359

Query: 361  AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFIT- 419
             +  K  +P   L +FL  +PGRVL  A+SAGRRE L+E L    L+P  +E W  F+  
Sbjct: 360  PLNRKGEEPGTSLRHFLASYPGRVLIAADSAGRREALIETLAAAGLKPEVLEDWRAFLLP 419

Query: 420  ----------------------------------------GAE----RLAITIAPLDDGL 435
                                                    GAE    + AITIAPL+ G 
Sbjct: 420  LQAEGGWEGVAPAGEEAEARALHPLQGIPFGHNPPLQAGEGAEAEGVKFAITIAPLEQGF 479

Query: 436  LLDDPGLALIAESPLFGQRVMQRRRRDKRGETAND--AVIKNLTELREGAPVVHIDHGVG 493
             L  P LA++ E  L+G+RV   R R +R   A D  A+I++LTEL  GAP+VH+DHGVG
Sbjct: 480  ALTKPALAVLTERELYGERVRSERERKRRRGAARDPEAIIRDLTELTPGAPIVHVDHGVG 539

Query: 494  RYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSEAWQ 553
            RY GL ++++ G   EFLT+EYA+  KLYVPVA L L++RY+G+   LAPLH LG +AW+
Sbjct: 540  RYQGLVSMDVGGMDGEFLTIEYAKGDKLYVPVAQLGLVSRYSGTAPELAPLHSLGGDAWE 599

Query: 554  KAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQAAIEA 613
            +A+RKAAE+VRDVAAELL IYA+R AR G +          F + FPFEETPDQ++AIEA
Sbjct: 600  RARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFGSTFPFEETPDQESAIEA 659

Query: 614  VRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRD 673
            V AD+ AP+ MDR++CGDVGFGKTEVA+RAAF    +G+QVAVLVPTTLLAQQHY +F D
Sbjct: 660  VLADLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGKQVAVLVPTTLLAQQHYRNFAD 719

Query: 674  RFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEE 733
            RFADWPV V+V+SRFKSAKEV  A   LA+G+ID+++GTHKLLQ DV+F++LGL I+DEE
Sbjct: 720  RFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTHKLLQPDVKFRNLGLVIVDEE 779

Query: 734  HRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVM 793
             RFGVRQKEQLK LR+EVD+LT+TATPIPRTLNMA+AG+RDLS+IATPP  R +VRTF+ 
Sbjct: 780  QRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIATPPEHRSAVRTFIS 839

Query: 794  EQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELE 853
              + +T++EAL REL RGGQVY+LHN+V++IE+   +L ELVP+ARI I HGQM ERELE
Sbjct: 840  AWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEELVPDARIRIAHGQMPERELE 899

Query: 854  QVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAY 913
            QVM+DF+ +RFNVLV +TIIETGID+P+ANTI+I+RAD FGLAQLHQLRGRVGRSHH+AY
Sbjct: 900  QVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADHFGLAQLHQLRGRVGRSHHRAY 959

Query: 914  AYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQAVG 973
            AYL+ P R+ ++ADA+KRLEA+A+ ++LGAGF LAT+DLEIRGAGELLG+ QSGQIQ +G
Sbjct: 960  AYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIG 1019

Query: 974  FTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILYKRIA 1033
            F LY E+L+RAV+A++ G  P+ +       E+ L L ALIP+DYLPDVHARL LYKRIA
Sbjct: 1020 FGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLAALIPDDYLPDVHARLTLYKRIA 1079

Query: 1034 SAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLEFEA 1093
            SA +E+ L+DLQVEMIDRFGLLPEPT+ L  + SLKL A  LGI+K+D G NGG++ F  
Sbjct: 1080 SARNEDELRDLQVEMIDRFGLLPEPTRQLFAVASLKLMATPLGIRKLDFGANGGRIVFRE 1139

Query: 1094 ETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLE 1138
            +  +DP+T+I+LIQ QP+ YK +G  + + ++ +    ER  + +
Sbjct: 1140 KPEIDPMTIIQLIQRQPRVYKLDGQDKLKVILELPGASERIRSAQ 1184