Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

 Score = 1114 bits (2881), Expect = 0.0
 Identities = 596/1137 (52%), Positives = 776/1137 (68%), Gaps = 20/1137 (1%)

Query: 12   TAGKQ-TWGNLPGAALSLAIAEAA---SSAGRFTLLLTADSQAADRLEQELRFFAPDLPV 67
            TAGK+ T    P +A +L +A+ A    +AGR T + TAD+  A RL  E+ FFAP+L  
Sbjct: 7    TAGKRFTLPRPPLSADALLLAQLAMREKAAGRATAMFTADANDAQRLIDEIAFFAPELRC 66

Query: 68   LPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSS 127
              FPDWETLPYD FSPHQD+IS+R+A+L+R+ +    +++VP TTAL+RLAP  FL G +
Sbjct: 67   ALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPAFLAGYT 126

Query: 128  LVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDN 187
                  Q ++  +++ +L  +GY  V  V   GE+AVRG LIDLFPMGS +P+R+DLFD+
Sbjct: 127  FHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFRVDLFDD 186

Query: 188  EIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQD 247
            EI+++RTFDP+TQRS+  V  VRLLP REFPM ++   RF+ R+RE  + D  +S I++D
Sbjct: 187  EIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARGRFRGRWRELLEGDPTKSRIYKD 246

Query: 248  LASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRG 307
            + +G+  AGIEYYLPLFF+ET+T+FDYL  D  V     +E A +HFW D   RY   RG
Sbjct: 247  MGNGVATAGIEYYLPLFFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNERYRLVRG 306

Query: 308  DLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKAN 367
            D  RP LPP  LFL  E  + R K   ++ +  +        E      LP  A+   A 
Sbjct: 307  DPERPALPPEALFLNAEQFYQRAKPHAQLAIRGDVPTEAPYAE---FDRLPPFAVVRGAE 363

Query: 368  QPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGA-ERLAI 426
             PL  L   + + P RVL  AES GRRE LL+ L    + P   +   +F   A E++ I
Sbjct: 364  DPLVGLKAHIAKTPHRVLLIAESDGRRESLLDFLRASGVNPPAFDSLAEFEASADEKVGI 423

Query: 427  TIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETAN-DAVIKNLTELREGAPV 485
              A L  G    + G+ L+ E+ LF      RRR  K+ + ++ +A+IK+L+EL  G PV
Sbjct: 424  ATAALASGFAWREQGIDLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVGDPV 483

Query: 486  VHIDHGVGRYLGLATLEIDGQAA---------EFLTLEYAENAKLYVPVANLHLIARYTG 536
            VH  HG+GRY GL  +++ GQ           E L LEYA+ A LYVPV+ LH I+RYTG
Sbjct: 484  VHTAHGIGRYRGLIHMDL-GQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRYTG 542

Query: 537  SDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFS 596
                 APLH+LGS  W+KAKRKAAEQVRD AAELL+IYARRAAR+G+AF    ADY  F+
Sbjct: 543  VSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPADYEVFA 602

Query: 597  AGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAV 656
              F F+ET DQ+AAI AV  DM++P+PMDRLVCGDVGFGKTEVA+RAAFIAV  G+QVA 
Sbjct: 603  NDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAF 662

Query: 657  LVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLL 716
            L PTTLLA+QHY +  DRFA WPV V  MSRF+SAKE+ AAA  LAEG++DI++GTHKLL
Sbjct: 663  LAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHKLL 722

Query: 717  QDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLS 776
               V+FK+LGL IIDEEHRFGVR KE +KA+R+EVD+LTLTATPIPRTL MA+ G+RDLS
Sbjct: 723  SQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLS 782

Query: 777  IIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836
            +IAT P RRL+++TFV  +    ++EA+LREL RGGQVY+LHN+V+TIE     L E++P
Sbjct: 783  VIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILP 842

Query: 837  EARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLA 896
            EARI + HGQM ERELE+VM DF  +R+N+L+ STIIETGIDVP+ANTIV+ RADKFGLA
Sbjct: 843  EARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLA 902

Query: 897  QLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRG 956
            QLHQLRGRVGRSHHQAYAYL+ P  + ++  A +RL+AI   ++LG+GF LA +DLEIRG
Sbjct: 903  QLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRG 962

Query: 957  AGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPE 1016
             GE+LGE QSG +  +GF LY EML  AV+A++ G +P+L  PL    EINL  PAL+P+
Sbjct: 963  TGEVLGESQSGNMTEIGFQLYNEMLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALLPD 1022

Query: 1017 DYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLG 1076
            DY  DVH RL  YK++A+A   + +  L  E++DRFG LP   + L+    L++ A   G
Sbjct: 1023 DYCGDVHLRLSFYKKLATAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARPYG 1082

Query: 1077 IKKVDAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDER 1133
            + KVDA P    + F+ + PVD + +I+LIQ + K  K  G  + R    ++ P ER
Sbjct: 1083 VVKVDAAPGIINITFKKDPPVDGMAIIQLIQ-KNKHIKLAGNEKLRIERELKEPKER 1138