Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 692 a.a., junction-specific ATP-dependent DNA helicase from Pseudomonas putida KT2440

 Score =  239 bits (609), Expect = 7e-67
 Identities = 162/442 (36%), Positives = 240/442 (54%), Gaps = 36/442 (8%)

Query: 545 HRLGSE---AWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPF 601
           HRL  E     Q ++++  E +R + A +L     RA R            A + A   F
Sbjct: 223 HRLAFEELLTHQLSQQRLRESLRSLRAPVLP----RATRL----------QAQYLANLGF 268

Query: 602 EETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTT 661
           + T  QQ     +  D+   +PM RLV GDVG GKT VA  AA  A+ +G QVA++ PT 
Sbjct: 269 QPTGAQQRVANEIAYDLSQHEPMMRLVQGDVGAGKTVVAALAALQALEAGYQVALMAPTE 328

Query: 662 LLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVR 721
           +LA+QHY +F+       + V  ++     K  AA+   +A G   +++GTH L Q++VR
Sbjct: 329 ILAEQHYITFKRWLEPLGIEVAWLAGKLKGKARAASLEQIANGA-PMVVGTHALFQEEVR 387

Query: 722 FKDLGLAIIDEEHRFGVRQKEQL--KALRSEV--DILTLTATPIPRTLNMAVAGMRDLSI 777
           FK L LAIIDE+HRFGV+Q+  L  K +  E+    L +TATPIPRTL M+     D S+
Sbjct: 388 FKHLALAIIDEQHRFGVQQRLALRRKGVAGELCPHQLIMTATPIPRTLAMSAYADLDTSV 447

Query: 778 IATPPARRLSVRT-FVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAE--- 833
           +   P  R  V T  V +  +  V E +      G Q Y++   ++  E+     AE   
Sbjct: 448 LDELPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEELTCQAAESTY 507

Query: 834 -----LVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIE 888
                 + E ++G+ HG+M+  E  ++M++F      +LVA+T+IE G+DVP+A+ ++IE
Sbjct: 508 EELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATTVIEVGVDVPNASLMIIE 567

Query: 889 RADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLA 948
             ++ GLAQLHQLRGRVGR    ++  LL      +S    +RL  +  T D   GF++A
Sbjct: 568 NPERLGLAQLHQLRGRVGRGSAVSHCVLL--YHPPLSQIGRERLGIMRETND---GFIIA 622

Query: 949 TNDLEIRGAGELLGEGQSGQIQ 970
             DLE+RG GE+LG  Q+G +Q
Sbjct: 623 EKDLELRGPGEMLGTRQTGLLQ 644