Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC62

 Score = 1238 bits (3204), Expect = 0.0
 Identities = 633/1134 (55%), Positives = 826/1134 (72%), Gaps = 6/1134 (0%)

Query: 13   AGKQTW-GNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFP 71
            AG+Q   G L GAA +  +AE A       +L+  D Q A RL  E+  F  D  V+   
Sbjct: 29   AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLA 87

Query: 72   DWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSLVLD 131
            DWETLPYD FSPHQDIIS R+++LY+LP +  G+L+VP+ T + R+ P  FL G +LV+ 
Sbjct: 88   DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 147

Query: 132  VGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIET 191
             GQ +  + +R +L+++GYR VD V EHGE+A RGAL+DLFPMGS+LPYR+D FD+EI++
Sbjct: 148  KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 207

Query: 192  LRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASG 251
            LR FD ++QR++++V+++ LLPA EFP  K  +  F++++R+ F+V      I+Q ++ G
Sbjct: 208  LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 267

Query: 252  IIPAGIEYYLPLFFEET-STLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLS 310
             +PAGIEY+ PLFF E    LF Y P +T + +   +E +AE F  D   R+E+R  D  
Sbjct: 268  TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPM 327

Query: 311  RPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKANQPL 370
            RPLLPP  L+L V++ F+ LK WPRV + +E L           + LP+LA++A+   PL
Sbjct: 328  RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPL 387

Query: 371  AELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITIAP 430
              L  FL+ F G V+F+ ES GRRE L ELL R+K+ P  +   D+       L I  A 
Sbjct: 388  DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA- 446

Query: 431  LDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDH 490
             + G +     LALI ES L G+RV  RRR+D R     D +I+NL EL  G PVVH++H
Sbjct: 447  -EHGFVDKVRNLALICESDLLGERVA-RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 504

Query: 491  GVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSE 550
            GVGRY G+ TLE  G   E+L L YA +AKLYVPV++LHLI+RY G  +  APLH+LG +
Sbjct: 505  GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 564

Query: 551  AWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQAA 610
            AW +A++KAAE+VRDVAAELLDIYA+RAA++G+AF      Y  F   FPFE TPDQ  A
Sbjct: 565  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 624

Query: 611  IEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNS 670
            I AV +DM  P  MDRLVCGDVGFGKTEVAMRAAF+AV + +QVAVLVPTTLLAQQHY++
Sbjct: 625  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 684

Query: 671  FRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAII 730
            FRDRFA+WPV +E++SRF+SAKE     A++AEGKIDILIGTHKLLQ DV+FKDLGL I+
Sbjct: 685  FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 744

Query: 731  DEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRT 790
            DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNMA++GMRDLSIIATPPARRL+V+T
Sbjct: 745  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 804

Query: 791  FVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRER 850
            FV E +   V+EA+LRE+LRGGQVYYL+NDV+ I+K A  LAELVPEARI IGHGQMRER
Sbjct: 805  FVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 864

Query: 851  ELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHH 910
            ELE+VM+DF+H+RFNVLV +TIIETGID+P+ANTI+IERAD FGLAQLHQLRGRVGRSHH
Sbjct: 865  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 924

Query: 911  QAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQ 970
            QAYA+LLTP  + ++ DA+KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLGE QSG ++
Sbjct: 925  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 984

Query: 971  AVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILYK 1030
             +GF+LYME+LE AV A++ G +P+LE       E+ LR+P+L+P+D++PDV+ RL  YK
Sbjct: 985  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1044

Query: 1031 RIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLE 1090
            RIASA  E  L++++VE+IDRFGLLP+P + L+ +  L+  A+KLGI+K++    GG +E
Sbjct: 1045 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE 1104

Query: 1091 FEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERL 1144
            F  +  V+P  LI L+Q QP+ Y+ +G T+ +F+  +     R   +      L
Sbjct: 1105 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1158