Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

 Score = 1243 bits (3217), Expect = 0.0
 Identities = 629/1134 (55%), Positives = 828/1134 (73%), Gaps = 6/1134 (0%)

Query: 13   AGKQTW-GNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFP 71
            AG+Q   G L GAA ++  AE         +L+T D Q A RL  E++ F    PV+  P
Sbjct: 13   AGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTAQ-PVMTLP 71

Query: 72   DWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSLVLD 131
            DWETLPYD FSPHQ+IIS R+++LY+LP L+ G+L++P+ T + ++ P  FL G +L+L 
Sbjct: 72   DWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHAFLHGHALMLK 131

Query: 132  VGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIET 191
             GQ +  +++R +LE +GYR VD V EHGEFA RGAL+DLFPMGS+ P+RID FD+EI++
Sbjct: 132  KGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDDEIDS 191

Query: 192  LRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASG 251
            LR FD +TQR++++V+ + LLPAREFP  K  +  F++++RE+F+V      ++Q ++ G
Sbjct: 192  LRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHVYQQVSKG 251

Query: 252  IIPAGIEYYLPLFFEET-STLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLS 310
             +PAGIEY+  LFF +    LF YLPT T + +   ++Q A+ FW D++ R++ RR D  
Sbjct: 252  TLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRRVDPM 311

Query: 311  RPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKANQPL 370
            RPLLPP  L+LPV+  FA LKQWPRV + S+ L           + LP+LA++ +   PL
Sbjct: 312  RPLLPPNALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPDLAVQHQNKSPL 371

Query: 371  AELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITIAP 430
              L  F++QF G+++F+ ES GRRE L E+L R+KL P  V+  +   T +    + I  
Sbjct: 372  DALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVKSLEQ--TASPGCYLMIGA 429

Query: 431  LDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDH 490
             + G +       LI ES L G+RV  RRR+D R     D +I+NL ELR G PVVH++H
Sbjct: 430  SEHGFIDTLRQRTLICESDLLGERV-SRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEH 488

Query: 491  GVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSE 550
            GVGRY GL TLE  G  AE+L L YA   KLYVPV++LHLI+RY G  +  APLH+LG +
Sbjct: 489  GVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAPLHKLGGD 548

Query: 551  AWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQAA 610
            AW +A++KAAE+VRDVAAELLD+YA+RAA  G+AF      Y  F  GFPF+ TPDQ  A
Sbjct: 549  AWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQA 608

Query: 611  IEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNS 670
            I AV +DM  P  MDRLVCGDVGFGKTEVAMRAAF+AV + +QVAVLVPTTLLAQQH+++
Sbjct: 609  INAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDN 668

Query: 671  FRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAII 730
            FRDRFA+WPV +E++SRF+S KE         EGK+DILIGTHKLLQ DV + DLGL I+
Sbjct: 669  FRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWLDLGLLIV 728

Query: 731  DEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRT 790
            DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNMA++G+RDLSIIATPPARRL+V+T
Sbjct: 729  DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKT 788

Query: 791  FVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRER 850
            FV E +   V+EA+LRE+LRGGQVYYL+NDV+ IEK A  L ELVPEARI IGHGQMRER
Sbjct: 789  FVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIGHGQMRER 848

Query: 851  ELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHH 910
            +LE+VM+DF+H+RFNVLV +TIIETGID+PSANTI+IERAD FGLAQLHQLRGRVGRSHH
Sbjct: 849  DLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHH 908

Query: 911  QAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQ 970
            QAYAYLLTP  + +S DA KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLGEGQSGQ++
Sbjct: 909  QAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSGQME 968

Query: 971  AVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILYK 1030
            +VGF+LYM++LE AV++++ G +P+LE  + G  ++ LRLPAL+P+D++PDV+ RL  YK
Sbjct: 969  SVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDVNTRLSFYK 1028

Query: 1031 RIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLE 1090
            RIASA ++  L DL+ E+IDRFG LP+  ++L+++  L+  A+ LGIK+++    GG +E
Sbjct: 1029 RIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEGNDKGGFVE 1088

Query: 1091 FEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERL 1144
            F     VDP  LI L+Q  PK Y+ +G ++ +F+  +    +R   +  L E +
Sbjct: 1089 FSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLEEM 1142