Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  545 bits (1403), Expect = e-158
 Identities = 292/673 (43%), Positives = 422/673 (62%), Gaps = 14/673 (2%)

Query: 458  RRRRDKRGETANDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAE 517
            R +  K+        +K L  L+ G  VVH+D+GVGR+ GL  +E++    E + L + +
Sbjct: 416  RYKSHKKASKTKALTLKELKTLQAGDYVVHVDYGVGRFAGLEKVEVNDNFQEAVRLIFRD 475

Query: 518  NAKLYVPVANLHLIARYTGSDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARR 577
            +  LYV + +LH I++Y+G +  L  + +LGS  W+  K+K   +V+D+A +L+ +YA+R
Sbjct: 476  DDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKRKVKDIAKDLIALYAKR 535

Query: 578  AARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKT 637
                G+ +A  S       + F FE+TPDQ  A   V+ADM  P PMDRLVCGDVGFGKT
Sbjct: 536  RNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDVKADMEKPYPMDRLVCGDVGFGKT 595

Query: 638  EVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAA 697
            EVA+RAAF A++  +QVAVLVPTT+LA QHY +F++R   +PV V+ ++RF++ K+V   
Sbjct: 596  EVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYINRFRTTKQVKEI 655

Query: 698  AADLAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLT 757
               +  G+IDIL+GTH+++  DV+FKDLGL IIDEE +FGV+ K+QLK LR  VD+LTLT
Sbjct: 656  TKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFGVKVKDQLKELRVNVDVLTLT 715

Query: 758  ATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYL 817
            ATPIPRTL+ ++ G RDLS+IATPP  R  V T +    +  +++A+ REL RGGQV+++
Sbjct: 716  ATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIRDAVSRELQRGGQVFFV 775

Query: 818  HNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGI 877
            HN V  I+  A  +  LVP+A+I   HGQM  ++LE++M  F    F+VLV++ IIE+G+
Sbjct: 776  HNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIEGEFDVLVSTNIIESGL 835

Query: 878  DVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIAN 937
            D+P+ANTI+I RA  FGL+ LHQ+RGRVGRS+ +AY YLLT     ++A+A KRL+ +  
Sbjct: 836  DIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLTAEARKRLQTLEE 895

Query: 938  TQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNL- 996
              DLG GF +A  DL+IRGAG LLG  QSG I  +GF +Y ++L+ AV+ +++    +L 
Sbjct: 896  FSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQELKENEFASLF 955

Query: 997  -------EQPLGGGPEINLRLPALIPEDYLPDVHARLILYKRIASAADEEGLKDLQVEMI 1049
                    + L     I   +  LIPEDY+ ++  RL LY ++ +   EE L      + 
Sbjct: 956  EVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERLNLYSKLDNIKTEEALTKFAHAVS 1015

Query: 1050 DRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLEFEAETPVDPL------TLI 1103
            DRFG +P   ++LM    L+  AE LG +K+       K  F   T            +I
Sbjct: 1016 DRFGPIPPVVEDLMETVRLRWLAEGLGFEKLVLKSGQMKCYFVPSTRESYFKSDIFGNII 1075

Query: 1104 KLIQGQPKRYKFE 1116
            + IQG  K  K +
Sbjct: 1076 RFIQGHGKFCKIK 1088



 Score = 81.3 bits (199), Expect = 4e-19
 Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 42  LLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPEL 101
           L++  D + A  L  +L      +    FP     PY     H+++ +  +  L R   L
Sbjct: 57  LIIAHDKEEAAYLASDLSSLLDRVTPHIFPSSYKRPYQ----HEEVDNANV--LMRAEIL 110

Query: 102 SHGI-------LVVPITTALH-RLAPTRFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCV 153
           +  +       ++V    AL+ ++   + L  ++    VG+ +DVE +   L    +   
Sbjct: 111 NKVLSSDTKMEIIVSYPEALYEKVINKKSLQENTFTAKVGEKVDVEFITELLSTYDFEKT 170

Query: 154 DTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFDPETQRSIDKVDSVRLLP 213
           D VYE G+FA+RG +ID+F   ++ PYRI+LF  EIE++RTFD E+Q S + +D + ++P
Sbjct: 171 DFVYEPGQFAIRGGIIDVFSFANEYPYRIELFGKEIESIRTFDTESQLSEESLDHISIIP 230

Query: 214 AREFPMQKE 222
             +  + +E
Sbjct: 231 NVQTKLMQE 239