Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 701 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

 Score =  241 bits (614), Expect = 2e-67
 Identities = 152/398 (38%), Positives = 225/398 (56%), Gaps = 17/398 (4%)

Query: 600 PFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVP 659
           PF  T  Q AA++ +  DM     M RL+ GDVG GKT VA+ A   AV +G Q  ++ P
Sbjct: 271 PFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVEAGGQAVLMAP 330

Query: 660 TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDD 719
           T +LA+QH+ +         +TVEV++     KE       +A G+  I+IGTH L QD 
Sbjct: 331 TEILARQHFATISKLAKAVGLTVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDS 390

Query: 720 VRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIA 779
           V +K+L LA++DE+HRFGV Q+ +L A      +L +TATPIPRTL +A  G  D+S + 
Sbjct: 391 VSYKNLVLAVVDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLT 450

Query: 780 TPPARRLSVRTFVMEQNK-STVKEALLRELLRGGQVYYL--------HNDVKTIEKCAAD 830
             PA R  ++T  +   +   + E L   L  G + Y++         +D+ + E+  A 
Sbjct: 451 EKPAGRKPIQTVTIPTERIGDIVERLRAALKDGKKAYWICPLVEETEESDLMSAEERHAV 510

Query: 831 LAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERA 890
           L++++  A IG+ HG+M   E +  M  F      +LVA+T++E G+DVP A  +VIE A
Sbjct: 511 LSQML-GANIGLIHGRMNGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPDATIMVIEHA 569

Query: 891 DKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATN 950
           ++FGLAQLHQLRGRVGR    +   LL   +  +S +   RL  + +++D   GF++A  
Sbjct: 570 ERFGLAQLHQLRGRVGRGDEASTCILL--YKGPLSENGRARLSILRDSED---GFLIAEE 624

Query: 951 DLEIRGAGELLGEGQSGQ--IQAVGFTLYMEMLERAVK 986
           DL++RG GELLG  QSG    +      + ++LE A K
Sbjct: 625 DLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIARK 662