Pairwise Alignments

Query, 1105 a.a., helicase SNF2/RAD54 family from Pseudomonas putida KT2440

Subject, 897 a.a., helicase from Pseudomonas simiae WCS417

 Score =  971 bits (2510), Expect = 0.0
 Identities = 495/822 (60%), Positives = 611/822 (74%), Gaps = 23/822 (2%)

Query: 294  HSLDPHVAVQLTIAPDVPEHLVVP-------LSHKLNA-LSHKVPTPTQVQEQLLDNIQP 345
            H+   H+A  L     V E L  P       L  KL A L ++V  P  V E ++    P
Sbjct: 84   HTNCKHIAAVLL---KVQETLAYPAAAQDAELLEKLQAVLENRVAFPQVVMEDVV----P 136

Query: 346  KPLLALGSLEYTAYMPKTGRMQRQMQHRAALAFDYDGLQASGTDEKPLTRLAGSTSQRIR 405
             P L L S+E++A+ P+ G+MQR +QHRAAL+F+Y G   SG     +     + S RI+
Sbjct: 137  VPRLWLASVEFSAFEPRNGKMQRYIQHRAALSFNYLGNYVSGQKNADIIVRQETQSLRIK 196

Query: 406  RQPQAEQTLRQMLRDFGFKPATRQSKALPDSAGEMYQLPDDEAWLRFAREGLPRLREAGW 465
            R P+ EQ  R+ LR  GFK ATRQSKALP+SAGE++++ +D AWL F     P LR  GW
Sbjct: 197  RHPELEQPYREQLRLLGFKIATRQSKALPESAGELFEMVNDSAWLNFTLNASPTLRAEGW 256

Query: 466  DIDIHRDFAFNLQEVDDWYATIDEAPGHEWFDLELGIVVDGQRHSLLPIVLHLLRSSPEL 525
            ++ I  DF F+L  VDDWYAT+DE P  +WFDLELGI+V+G+R SLLPI+L+L+RS  E+
Sbjct: 257  ELQIDEDFGFDLSAVDDWYATVDEGPERDWFDLELGIIVNGERLSLLPILLNLMRSHTEI 316

Query: 526  LRPSELARRSDDEPLLIDL----NRGRLDAPALRVALPYGRIKAVMGTLGELYLHEDTAG 581
            L P +LARR DDE +L+++    N G      L+VALPYGR+K V+ TLGE YL +D   
Sbjct: 317  LNPEKLARRRDDELILVNIPGLPNGGH---GPLQVALPYGRLKPVLATLGEFYL-QDAGT 372

Query: 582  PSLRMERADAARLNEIEGLPLHWEGGEHVRDLGRRLRDARDLQVEPPTGLQASLRPYQQQ 641
             +LR+ +ADA RLN +E LPL WEGGE +R+  +RLRD +D     P GL A+LRPYQ +
Sbjct: 373  TTLRLAKADAIRLNPLEDLPLQWEGGEKIRNFAQRLRDIKDFTCVAPEGLNATLRPYQLE 432

Query: 642  GLNWLQALREMGTGGILGDDMGLGKTLQALAHLLLEKQSGRLSAPALAVMPTSLIPNWLD 701
            GL+W+Q+LR++  GGIL DDMGLGKTLQ LAH+L EK +GRL  P + VMPTSLIPNWLD
Sbjct: 433  GLSWMQSLRQLEVGGILADDMGLGKTLQTLAHILTEKIAGRLDRPCMVVMPTSLIPNWLD 492

Query: 702  EAQRFAPDLRVLALHGPGRSKHFTKLHEYDLVLTTYALMPRDLEQLRPQAWHVLILDEAQ 761
            EA  F P L VLAL+G  R KHF  L +YDL+LTTYAL+P+D+EQL     HVLILDEAQ
Sbjct: 493  EAAHFTPQLNVLALYGAARKKHFATLQDYDLLLTTYALLPKDIEQLSALPLHVLILDEAQ 552

Query: 762  NIKSSSSKAALAVCELQAGQRLCLTGTPMENNLGELWSIFHFLMPGWLGDLKRFNQDYRN 821
             IK+ SSKAA A  EL A QRLCL+GTP+EN+LGELWS+FHFL+PGWLGD+K FN+DYR 
Sbjct: 553  YIKNPSSKAAQAARELNARQRLCLSGTPLENHLGELWSLFHFLLPGWLGDVKSFNRDYRT 612

Query: 822  PIERHGDSERMAHLASRIRPFLLRRTKEQVATELPAKTEMVHWVELSDAQRDTYEAVRVA 881
            PIE+     R+ HL  RI+PFLLRRTKEQVATELP KTE++HWV+L++AQRD YE +R+A
Sbjct: 613  PIEKRASDVRLQHLNGRIKPFLLRRTKEQVATELPPKTEIIHWVDLNEAQRDVYETMRLA 672

Query: 882  MDQKVRDEIARNGAARSQIVILDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLEML 941
            MD+KVRDEI R G ARSQI+IL+ALLKLRQVCCDLRLV         +  GKL +L+EML
Sbjct: 673  MDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDATLPARGSSSGKLDSLMEML 732

Query: 942  EELLSEGRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFL 1001
             EL  EGRR+LLFSQFTSML+LIE EL+KR + Y+LLTG TRDRRTPV+ FQ G+ ++FL
Sbjct: 733  AELFEEGRRILLFSQFTSMLSLIEVELKKRGVAYALLTGQTRDRRTPVKDFQSGKLQIFL 792

Query: 1002 ISLKAGGVGLNLTAADTVIHFDPWWNPASENQATDRAYRIGQDKPVFVFKLITRGTVEEK 1061
            ISLKAGGVGLNLT ADTVIH+DPWWNPA+ENQATDRAYRIGQ+KPVFV+K+I RGTVEEK
Sbjct: 793  ISLKAGGVGLNLTEADTVIHYDPWWNPATENQATDRAYRIGQEKPVFVYKMIARGTVEEK 852

Query: 1062 IQLLQQEKAALAASLLDGGQAGQWRLGDEEIEALFAPLPGKR 1103
            IQ LQ+EK+ LAA +LDG   G W+LG+E+IEALFAPLP K+
Sbjct: 853  IQHLQKEKSDLAAGVLDGRTTGDWQLGNEDIEALFAPLPHKQ 894



 Score = 76.6 bits (187), Expect = 8e-18
 Identities = 42/96 (43%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 13  PNWIQSFSKAALQRGERYAEEGRAELEGIHGPTITASCQGSGNNHYRQRIELH--VAGGH 70
           P+W   F + +L+RG RYA E R  +      TI ASC+GSG N YRQ I L     G  
Sbjct: 13  PSWANRFKEQSLERGRRYALENRVRIVECGDSTIVASCEGSGGNVYRQTISLRESAKGTL 72

Query: 71  CHVRGDCDCPVRHNCKHCAAVLFCVSDRFSRREATQ 106
             V   C CPV  NCKH AAVL  V +  +   A Q
Sbjct: 73  ILVDSRCTCPVHTNCKHIAAVLLKVQETLAYPAAAQ 108