Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 827 a.a., DNA topoisomerase I from Rhodanobacter sp000427505 FW510-R12

 Score =  439 bits (1129), Expect = e-127
 Identities = 277/654 (42%), Positives = 377/654 (57%), Gaps = 73/654 (11%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           M K+L+IVESPAKAKTINKYLG  + V +S GH+RDL                       
Sbjct: 1   MAKNLLIVESPAKAKTINKYLGKDFQVLASYGHVRDL----------------------- 37

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
               PKE A         VD +HG+   YE++   EK ++ + + AK AD IYLATDLDR
Sbjct: 38  ---KPKEGA---------VDTEHGFAMAYEVIERNEKHVDAIAKAAKLADDIYLATDLDR 85

Query: 121 EGEAIAWHLREAIGG----DDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRF 176
           EGEAI+WH+ E +         +  RVVF+EIT KAI+ A + P +L  D V+AQQARR 
Sbjct: 86  EGEAISWHISEILKQRGLVKGKQMHRVVFSEITPKAIKAAVAAPRQLSHDLVDAQQARRA 145

Query: 177 LDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAK 236
           LD +VG+ +SP+LW K+ RGLSAGRVQS A++++VERE EI AF   EYW I A L   K
Sbjct: 146 LDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVEREEEIEAFKAREYWTIEAQL---K 202

Query: 237 NAKVRF-----EVAREKGEAFKPLNEAQAMAALEKLKASS---YSVVKREDRPTSSKPSA 288
           +A+  F      +  +K E F   +EA A+AA + LK ++    +V +   +    +P+A
Sbjct: 203 HAEGDFTARLSRLNGKKFEQFDLTSEADALAARDALKQAARGRLTVSEVSSKERKRRPAA 262

Query: 289 PFITSTLQQAASNRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSADALD 339
           PF TSTLQQ A+ +LGF   +TM +AQ LYE          G ITYMRTDST L  DA+ 
Sbjct: 263 PFTTSTLQQEAARKLGFTTSRTMKVAQGLYEGVALGSEGNVGLITYMRTDSTMLGDDAVA 322

Query: 340 MARSYIEREFGKQYLPEAPLVYGSK-EGAQEAHEAIRP-SDVNTHPTKLSGMERDAERLY 397
             R  I R+FG Q LP+AP +Y +K + AQEAHEAIRP S ++T  +  S +  D  +LY
Sbjct: 323 ELRQLIARDFGSQALPDAPQMYKTKSKNAQEAHEAIRPTSAMHTPKSVASFLNDDQRKLY 382

Query: 398 ELIWRQFLACQMPPAQYLSTSVT-----VAAGDFELRAKGRILKFDGYTRVLPQ--QSKP 450
           ELIW++ +ACQM  A   + +       VA GD   RA G  +   G+  V  +    K 
Sbjct: 383 ELIWKRTVACQMIHATLNTVTAEFAVRGVAGGDAAFRASGTTVVDPGFLAVYEEGRDQKG 442

Query: 451 GEDDV----LPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAI 506
            EDD     LP +   E + L  I   QHFT+PP R++EASLVK +E+ GIGRPSTYA+I
Sbjct: 443 AEDDDEGRRLPRLAVDEQVPLHDIAADQHFTEPPPRYSEASLVKTLEEYGIGRPSTYASI 502

Query: 507 ISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDW 566
           I  +Q+R YV L +RRF    +G  V++ L++ F+  +DY FTA ME+ LD V++GE  W
Sbjct: 503 IQVLQNREYVFLDSRRFKPSDVGRAVSKFLTQHFTRYVDYDFTAKMEDELDAVSRGEEAW 562

Query: 567 KNVLDEFYGDFSKKLQTAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTGVF 620
             +++ F+  F +++     S D   A          K  G+P+ +R    G +
Sbjct: 563 MPLMERFWQPFKQQVDEKTESVDRSEATGARELGSDPKS-GKPVSVRLGRFGPY 615