Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

 Score =  428 bits (1100), Expect = e-124
 Identities = 264/670 (39%), Positives = 368/670 (54%), Gaps = 91/670 (13%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64
           +VIVESPAKAKTINKYLG  Y V +S GH+RDLP+   +                     
Sbjct: 15  VVIVESPAKAKTINKYLGPGYEVIASYGHVRDLPSKDGS--------------------- 53

Query: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124
                         VDPD  ++  +++ P  +K + E+    K AD + LATD DREGEA
Sbjct: 54  --------------VDPDADFRMLWDVDPKAQKRLNEIAAAVKGADGLILATDPDREGEA 99

Query: 125 IAWH----LREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           I+WH    LR+       + +RVVFN ITK+A+ EA   P  +D   V+A  ARR LD +
Sbjct: 100 ISWHVLEVLRQKKALKSQKVERVVFNAITKQAVLEAMKSPRAIDSALVDAYLARRALDYL 159

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VG+ +SP+LW K+    SAGRVQSVA++LV +REREI  F+ +EYW I A L T +N + 
Sbjct: 160 VGFTLSPVLWRKLPGARSAGRVQSVALRLVCDREREIETFVRKEYWSILAKLATPRNEEF 219

Query: 241 RFEVAREKGEAFKPLNEA---QAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQ 297
              ++   G+    L+     +A A  E L ++++ V   E +P    P  PF TSTLQQ
Sbjct: 220 EARLSGADGKKITRLSVGTAEEARAFREALDSAAFRVRSVEAKPMKRHPQPPFTTSTLQQ 279

Query: 298 AASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADALDMARSYIEREF 349
            AS +LG    +TM +AQRLYE         G ITYMRTD  +++ +A+   R  I ++F
Sbjct: 280 EASRKLGLAPARTMQIAQRLYEGVDVGGETVGLITYMRTDGVDMAPEAVAATRDAIGKQF 339

Query: 350 GKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSG-MERDAERLYELIWRQFLAC 407
           G++YLP  P  Y +K + AQEAHEAIRP+D + HP  ++  ++ +  +LYELIW + +A 
Sbjct: 340 GQKYLPGVPRKYTTKAKNAQEAHEAIRPTDPSRHPRDVARYLDGEQAKLYELIWIRTVAS 399

Query: 408 QMPPAQYLSTSVTV----AAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDV-----LPE 458
           QM  A+   T+  +     A   +L A G ++KFDG+   L ++ K  EDD      LP 
Sbjct: 400 QMESAELERTTADIEAKAGARTLDLTATGTVVKFDGFL-TLYREGKDDEDDDEEGRRLPA 458

Query: 459 MVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTL 518
           M   EAL    I  +QHFT+PP R++EASLVK ME+ GIGRPSTYAA+++ ++DR YV L
Sbjct: 459 MSANEALAKRDISTTQHFTEPPPRYSEASLVKRMEELGIGRPSTYAAVLAVLRDREYVKL 518

Query: 519 HNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFS 578
             ++   E  G +VT  L   F   ++Y FTAD+EE LD+V+  E DWK VL  F+ DF 
Sbjct: 519 DKKKLVPEDKGRLVTAFLESFFKRYVEYDFTADLEEKLDEVSAAELDWKEVLRAFWQDFH 578

Query: 579 KKLQTAES---------------------SEDGMRANQPTMTNIPCKECGR-PMMIRTAS 616
             ++  +                       EDG     P +    C  CG   + ++   
Sbjct: 579 AAIEATKDLRVSQVLDALDEMLTAHIFPPREDG---TDPRL----CPTCGTGRLSLKMGK 631

Query: 617 TGVFLGCSGY 626
            G F+GCS Y
Sbjct: 632 FGAFIGCSNY 641



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKL 745
           C  CG+  + LK G+FG F GC+N P C++TR L
Sbjct: 617 CPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPL 650