Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score =  154 bits (389), Expect = 2e-41
 Identities = 173/668 (25%), Positives = 278/668 (41%), Gaps = 115/668 (17%)

Query: 5   LVIVESPAKAKTINK-----------YLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKR 53
           L + E P++AK I             +LGN   V   IGH+ +                 
Sbjct: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLET---------------- 46

Query: 54  GKAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIY 113
                 AP  +  EK +R ++A + + P+   K K  + P      + ++RL  +A  + 
Sbjct: 47  ------APPDAYDEKYKRWVLADLPIVPE---KWKMRVKPKTASQFKAVKRLLGEAQELV 97

Query: 114 LATDLDREGEAIAWHLREAIGGDDTRYK----RVVFNEITKKAIQEAFS--QPGELDIDR 167
           +ATD DREGE IA  L E       RY+    R+  + +   +I++A +  +PG      
Sbjct: 98  IATDADREGEMIARELVE-----HCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSL 152

Query: 168 VNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFIP 222
            ++   R   D ++G  +S L      +      L  GRVQ+  ++LVV+R+R I  F+P
Sbjct: 153 YHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVP 212

Query: 223 EEYWEIHADLGTAKNAKVRF--------EVAREKGEAFKPLNEAQAMAALEKLKASSYSV 274
             YW I  DL   ++ ++ F        +   ++G    P     A  A+    A++  +
Sbjct: 213 VAYWAIDVDL---QHERITFTAQWRAAEDACDDQGRCLDPQLARDAADAMR--NAATARL 267

Query: 275 VKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTD---- 329
           VK            PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D    
Sbjct: 268 VKLRTERMREVAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYL 327

Query: 330 --STNLSADALDMARSYIEREFGKQYLPEAPLVYGSK---EGAQEAHEAIRPSDVNTHPT 384
             S +  A  +  A +  +     + +P       S+   +    AH  I P+       
Sbjct: 328 PLSQHSEAPKILAALARADAAV-NELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVG 386

Query: 385 KLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVL 444
           +L+G  R    +Y LI  ++LA  +P  +Y  T          LRA G+++   G+ R L
Sbjct: 387 QLTGKHR---AVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRAL 443

Query: 445 PQQSKPGE------DDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEM------ 492
           P+   P +         LP +VQG+   + +++    +T+PP  FTE  L+K M      
Sbjct: 444 PEALAPAKGREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKL 503

Query: 493 -----------EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFS 541
                      +  GIG  +T A II  + DRGY+  + +   +      + + +  +  
Sbjct: 504 VEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRA-- 561

Query: 542 NLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMT-N 600
            + D G TA  E+ LD V  GE      L+EF        Q A  S+   R N   MT  
Sbjct: 562 -IADPGTTAIWEQALDMVQSGEMS----LEEFVAK-----QAAWMSKQVARCNGMRMTIT 611

Query: 601 IPCKECGR 608
            P    GR
Sbjct: 612 GPASPAGR 619