Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 987 a.a., DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) from Variovorax sp. SCN45

 Score =  138 bits (347), Expect = 2e-36
 Identities = 178/702 (25%), Positives = 291/702 (41%), Gaps = 112/702 (15%)

Query: 1   MGKSLVIVESPAKAKTINKYL---------------GNQYVVKSSIGHIRDLPTSGSASA 45
           M K+LVI E P+ A+ I + L                + YVV S++GH+ ++       A
Sbjct: 1   MTKTLVIAEKPSVAQDIVRALTPVAGKFDKHDEHFENDSYVVTSAVGHLVEI------QA 54

Query: 46  SKEPAAKRGK-AAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRR 104
            +E   KRGK +    P + P             + P    K +         V+++ +R
Sbjct: 55  PEEFDVKRGKWSFANLPVIPP----------HFDLKPVDKTKTRLNA------VVKQAKR 98

Query: 105 LAKDADTIYLATDLDREGEAIAWHLREAIGGD---DTRYKRVVFNEITKKAIQEAFS--Q 159
             KD   +  A D  REGE I   + +  GG    +   KR+    +T +AI++ F   +
Sbjct: 99  --KDVTQLINACDAGREGELIFRLIEQYAGGKSGLNKPVKRLWLQSMTPQAIRDGFDALR 156

Query: 160 PGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVERE 214
             +      +A ++R   D +VG   +  + A  +R       + GRVQ+  + +VVERE
Sbjct: 157 TEKQMQGLADAARSRSEADWLVGINGTRAMTAFNSRDGGFFLTTVGRVQTPTLSVVVERE 216

Query: 215 REIRAFIPEEYWEIHADLGTA-------------KNAKVRFEVARE---KGEAFKPLNEA 258
            +IR F+  +YWEIH                   K A        E   +  A +  NE 
Sbjct: 217 EQIRKFVSRDYWEIHGTFAAEAGEYPGKWFNPDWKKANAPLLANGEPDPEQRADRVWNEQ 276

Query: 259 QAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLY 318
           +A A  +  +    + V  E +PT+      F  ++LQ+ A+ R GF  K T+ +AQ LY
Sbjct: 277 EARAIADAARGKP-ATVTEESKPTTQASPMLFDLTSLQREANGRFGFSAKTTLALAQSLY 335

Query: 319 EA-GYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLVYGSKEG--AQEAHEAIR 375
           E    +TY RTDS  L  D L + +  +           AP    + +G   +       
Sbjct: 336 ERHKALTYPRTDSRALPEDYLPVVKDTMGMLANSGMKHLAPFAKQAVDGNYVRPNKRIFD 395

Query: 376 PSDVNTH----PT--KLSGMERDAERLYELIWRQFLACQMPPAQYLSTS--VTVAAG--D 425
            + V+ H    PT    SG+    ++LY+ + R+FL+   P A+Y  T+   TV  G   
Sbjct: 396 NAKVSDHFAIIPTLQAPSGLSEAEQKLYDFVVRRFLSVFFPSAEYQVTTRISTVEQGGKK 455

Query: 426 FELRAKGRILKFDGYTRVLPQQSKPG--EDDV----LPEMVQGEALKLIQIDPSQHFTKP 479
           +  R  G++L   G+  +  ++++    EDD     L  +  GE +K    D     T+P
Sbjct: 456 YPFRTDGKVLVKPGWLAIYGKEAQDDEKEDDKDGKRLVPVKPGEIVKTESADTKGLKTRP 515

Query: 480 PARFTEASLV----------------KEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRF 523
           PAR++EA+L+                + M+++G+G P+T AA I  +    Y+    R  
Sbjct: 516 PARYSEATLLGAMEGAGKTIDDDELREAMQEKGLGTPATRAATIEGLITEKYMLREGREL 575

Query: 524 Y-SEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQG--ERD-WKNVLDEFYGDFSK 579
             + K   ++T         L     T + E  L  + +G   RD +   + +      K
Sbjct: 576 IPTAKAFQLMTLLRGLGVEELSKAELTGEWEYKLAQMEKGALSRDAFMREIAQMTEHIVK 635

Query: 580 KLQTAESSEDGMRANQPTMTNIPCKECG---RPMMIRTASTG 618
           K +  E   D +  +  T+   PC  CG   R    R A TG
Sbjct: 636 KAK--EYDRDTVPGDYATL-QTPCPNCGGIVRENYRRYACTG 674