Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

 Score =  425 bits (1092), Expect = e-123
 Identities = 271/694 (39%), Positives = 377/694 (54%), Gaps = 92/694 (13%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64
           LVIVESPAKAKTI KYLG  + V +S GHIRDLP                          
Sbjct: 3   LVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLP-------------------------- 36

Query: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124
           PK+ +         VDPD+G+   +E    K K ++ +   AK A  + LATD DREGEA
Sbjct: 37  PKDGS---------VDPDNGFAMSWENYGDKGKQLKAIADEAKKATRLILATDPDREGEA 87

Query: 125 IAWHLREAIGGDDT---RYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRVV 181
           I+WH++E +           RV FN ITK A+ +A ++P  LD D ++A +ARR LD +V
Sbjct: 88  ISWHVQEVLRAKKALPQTVDRVTFNAITKAAVLDAMAKPRALDEDLIDAYRARRALDYLV 147

Query: 182 GYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVR 241
           G+ +SP+LW K+    SAGRVQSVA++LVVEREREI +F+P+EYW I A++         
Sbjct: 148 GFTLSPVLWRKLPGAKSAGRVQSVALRLVVEREREIESFVPQEYWSISAEMEQGGQGFTA 207

Query: 242 FEVAREKGEAFKPLN---EAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQA 298
             + R KGE    L    E  AMAA   ++A  ++V K E +P +  P  PF TSTLQQ 
Sbjct: 208 -RLVRWKGEKIDRLTIGKEGDAMAAKADVEAGRFTVDKVETKPLTRNPPPPFTTSTLQQE 266

Query: 299 ASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAP 358
           A+ +LGF    TM +AQ+LYE G ITYMRTD   +   A+  AR  I   +   YLPE P
Sbjct: 267 AARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQMDGSAISAARKAIAERYDGGYLPEKP 326

Query: 359 LVYGSK-EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLST 417
             Y +K + AQEAHEAIRP++   H  K+ G   D  RLY+LI+++ LA QM  A+   T
Sbjct: 327 RQYQTKAKNAQEAHEAIRPTEF--HRDKVGG--GDHARLYDLIFKRALASQMASARLERT 382

Query: 418 SVTVA--AGDFELRAKGRILKFDGYTRVLPQQSKPGEDD---VLPEMVQGEALKLIQIDP 472
           ++ +   +G   LRA G+++ F G+  +  +     EDD   +LP + +G+A    ++  
Sbjct: 383 TIDMVDGSGSHTLRATGQVVIFPGFLALYEEGRDDAEDDDSKLLPRLSEGDAPAKKKVSA 442

Query: 473 SQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIV 532
            QHFT+PP R++EASLVK++E+ GIGRPSTYA+ +  ++DR YV +   RF++E+ G +V
Sbjct: 443 EQHFTQPPPRYSEASLVKKLEELGIGRPSTYASTLQVLKDRDYVRVEKNRFFAEESGRLV 502

Query: 533 TERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMR 592
           T  L   F   + Y FTA +E+ LD+++ G   W+ VL+ F+ DF  K  TAE  E    
Sbjct: 503 TAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQEVLEAFWKDFKPK--TAEIME---- 556

Query: 593 ANQPTMTNIPCKECGRPMM----------------------IRTASTGVFLGCSGYSLPP 630
             +P+       +   PM+                      +R    G F+ CS Y    
Sbjct: 557 -QKPSDITAELDKFLEPMLFPPKADGSNPRACPLCADGQLSLRGGRFGAFIACSNY---- 611

Query: 631 KERCKATVNL-VPGDEIAADDEGESESRVLLGKH 663
              CK T     PG    AD   E     +LG+H
Sbjct: 612 -PECKYTRKFGQPGGSDGADTGPE-----ILGQH 639



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKLLKSG 749
           C  C   ++ L+ GRFG F  C+N P CK TRK  + G
Sbjct: 587 CPLCADGQLSLRGGRFGAFIACSNYPECKYTRKFGQPG 624