Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

 Score =  147 bits (371), Expect = 2e-39
 Identities = 169/647 (26%), Positives = 265/647 (40%), Gaps = 101/647 (15%)

Query: 5   LVIVESPAKAKTINKYLG-----------NQYVVKSSIGHIRDLPTSGSASASKEPAAKR 53
           L + E P++AK I K LG               V   IGH+ +                 
Sbjct: 3   LFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLET---------------- 46

Query: 54  GKAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIY 113
                 AP  S  E+ +R  +A + + PD   K K  + P      + ++RL  +A  + 
Sbjct: 47  ------APPDSYDERYKRWNLADLPIIPD---KWKMLVKPKTASQFKAVKRLLGEARELV 97

Query: 114 LATDLDREGEAIAWHLREAIGGDDTRYK----RVVFNEITKKAIQEAFSQ--PGELDIDR 167
           +ATD DREGE IA  L E       RY+    R+  + +   +I++A ++  PG    + 
Sbjct: 98  IATDADREGEMIARELVE-----HCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNL 152

Query: 168 VNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFIP 222
            ++   R   D ++G  +S L      +      L  GRVQ+  ++LVV+R+R I  F+P
Sbjct: 153 YHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVP 212

Query: 223 EEYWEIHADL---GTAKNAKVRF--EVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKR 277
             +W I   L   G   NA+ R   +   ++G   K     QA A +    A +   VK 
Sbjct: 213 VPFWAIDVQLEHAGQRFNAQWRAPEDACDDQGRCLKQSLAQQAAADIG--HAGTARAVKV 270

Query: 278 EDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTD------S 330
                      PF   TLQ+  S + G G ++T+ +AQ LYE    ITY R+D      S
Sbjct: 271 ATERVREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQS 330

Query: 331 TNLSADALDMARSYIEREFG--KQYLPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKLSG 388
            +  A A+  A    +      + YL          +    AH  I P+   + P++L  
Sbjct: 331 QHAEAPAILAALQRADASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPA 390

Query: 389 MERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQS 448
             +    +Y LI  ++LA  +P  +Y  T          LRA G+ +   G+ R LP+  
Sbjct: 391 KHK---AVYTLIRARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEAL 447

Query: 449 KPGED------DVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEM---------- 492
            P +        VLP + +G+   +  +     +T+PP  FTE  L+K M          
Sbjct: 448 TPAKGREAPPAQVLPALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDP 507

Query: 493 -------EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMD 545
                  E  GIG  +T A+II  + DRGY+  + +   +      + + +  +   + D
Sbjct: 508 RLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRA---IAD 564

Query: 546 YGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMR 592
            G TA  E+ LD V  GE      L+EF    S  +        GMR
Sbjct: 565 PGTTAIWEQALDMVQSGEMP----LEEFVARQSAWMGKLVERCSGMR 607