Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 815 a.a., DNA topoisomerase I from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  450 bits (1158), Expect = e-130
 Identities = 266/628 (42%), Positives = 369/628 (58%), Gaps = 89/628 (14%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           M K+LVIVESPAKAKTI  YLG  +VVKSS GH+RDLP   +A                 
Sbjct: 1   MIKNLVIVESPAKAKTIEGYLGKDFVVKSSFGHVRDLPKGNNA----------------- 43

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
                             +D +HG+K  Y +   K++V+ +LR+LAK+A+ ++LA+D DR
Sbjct: 44  ------------------IDVEHGFKPTYVVSSDKKEVVAQLRKLAKEAEMVWLASDDDR 85

Query: 121 EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           EGEAI+WHL EA+  +D + +R+VF EITK AI  A S P  +D+D VNAQQARR LDR+
Sbjct: 86  EGEAISWHLTEALDLNDAKTRRIVFREITKNAILNAISTPRGIDMDLVNAQQARRILDRL 145

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VG+ +SP+LW KI  GLSAGRVQSVAV+LVVEREREI  F  E  + + A          
Sbjct: 146 VGFELSPVLWKKIKTGLSAGRVQSVAVRLVVEREREIERFKAEATFRVTASFDVQGRT-- 203

Query: 241 RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS 300
              +  E    FK   EAQA   L+    + Y +   E +P    P+ PF TSTLQQ AS
Sbjct: 204 ---LEAELPHKFKTEEEAQAF--LQACVGAEYKIENLEKKPLKRSPAPPFTTSTLQQEAS 258

Query: 301 NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV 360
            +L F V +TM +AQRLYE+G I+YMRTDS NLS +A+  A   I   FG+ ++      
Sbjct: 259 RKLYFSVAQTMTVAQRLYESGKISYMRTDSVNLSDEAIQGATREITSSFGENFVKTRRFK 318

Query: 361 YGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT 420
             S   AQEAHEAIRP+D +     ++  +R+ +RLYELIW++ +A QM  A+   T+VT
Sbjct: 319 TKS-ASAQEAHEAIRPTDFS---QMVASSDRNEQRLYELIWKRAIASQMADAEIEKTTVT 374

Query: 421 VAAG---DFELRAKGRILKFDGYTRVLPQQSKPGEDD--------VLPEMVQGEALKLIQ 469
           +      D +L+A G ++KF+G+ +V   +SK  E+D        +LP +  G+ + L Q
Sbjct: 375 IGISTQPDQKLQATGEVIKFEGFLKVY-IESKDDEEDGADDDVKGMLPPLSIGQGISLRQ 433

Query: 470 IDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNR-------- 521
           +  +Q FT+P AR+TEASLVK++E+ GIGRPSTYA  ISTIQ RGYV    R        
Sbjct: 434 MLATQRFTRPAARYTEASLVKKLEEMGIGRPSTYAPTISTIQKRGYVEKDTREGKERNYQ 493

Query: 522 -----------------------RFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDD 558
                                  + +      +V + L E F N++DY FTA +E   D+
Sbjct: 494 VLTLKGSDITTQTKTEITGAEKAKLFPTDTAMVVNDFLVEHFPNVIDYSFTARVEAEFDE 553

Query: 559 VAQGERDWKNVLDEFYGDFSKKLQTAES 586
           +AQG+++W+N+LD+FY  F K+++++E+
Sbjct: 554 IAQGQKEWENMLDQFYQKFHKRIESSEN 581