Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 815 a.a., DNA topoisomerase III from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  126 bits (316), Expect = 6e-33
 Identities = 153/600 (25%), Positives = 255/600 (42%), Gaps = 97/600 (16%)

Query: 12  AKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALSPKEKARR 71
           AKAK    Y GN Y V  + GH   L         +EP   R             E  R 
Sbjct: 21  AKAKKDGYYEGNGYQVTWTFGHFCTL---------REPDDYR------------PEWKRW 59

Query: 72  QLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIA-WHLR 130
            L     +   +G K   +   G +K  + +++L   A+ +    D  +EGE I  W L 
Sbjct: 60  SLYDLPMLPEKYGIKLMKD--SGVQKQFKIIKQLLDKAEEVINCGDAGQEGEVIQRWVLT 117

Query: 131 EAIGGDDTRYKRVVFNEITKKAIQEAFSQPGE-LDIDRV-NAQQARRFLDRVVGYMVSPL 188
           EA       +KR+  + +T++AI++ F++  E  + D +  A ++R   D ++G   + L
Sbjct: 118 EAKYRKP--FKRLWISSLTEEAIRQGFAKLREGAEFDSLYQAGKSRAIGDWLLGLNATRL 175

Query: 189 LWAKIARG----LSAGRVQSVAVKLVVEREREIRAFIPEEYWEI---HADLGTAKNAKVR 241
              K A G    LS GRVQ+  + ++V R  EI  F+P+ +WE+   + D  T  +   R
Sbjct: 176 FTLKYANGSRQTLSIGRVQTPTLAMLVNRHHEIANFVPQPFWELKTLYRDT-TFSSTNGR 234

Query: 242 FEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASN 301
           F+             E +A+  +E ++ +  ++   E +  +  P   F  ++LQ   +N
Sbjct: 235 FQ------------KEEEALKIMEAIREAELTITDVETKKGTEAPPKLFDLTSLQIECNN 282

Query: 302 RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPE-APLV 360
           +L     +T+   Q LYE   ++Y R D+T L  D        ++      Y  E APL+
Sbjct: 283 KLSLSADETLKTVQSLYEKKVVSYPRVDTTFLPDDIYPKIPGILQGL--SNYSQEVAPLL 340

Query: 361 YGSKEGAQEA--------HEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPA 412
                  ++         H AI P+        L G E D   +Y++I R+F+A   P  
Sbjct: 341 QNKIRKTKKVFNNNKVTDHHAIIPT--GAAAGGLYGREAD---VYDIITRRFIAAFYPDC 395

Query: 413 QYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQ---SKP-GED--------DVLPEMV 460
              +T+V   +  +  + +G+ +   G+  +   +   S+P G+D         VLP   
Sbjct: 396 IVSNTTVMAESAGYTFKVRGKQILDPGWRVIYGAEDVKSEPTGKDAKEEEEAAGVLPHFE 455

Query: 461 QGEALKLIQIDPSQHFTKPPARFTEASLVKEME----------------KRGIGRPSTYA 504
           +GE      +   +  T PP  +TEA+L++ ME                + GIGRPST A
Sbjct: 456 KGEHGPHEPL-LEKKMTNPPKEYTEATLLRAMETAGKQVEDEELKDALKENGIGRPSTRA 514

Query: 505 AIISTIQDRGYVTLHNRRFYSEKMG-DIVTERLSESFSNLMDYGFTADMEENLDDVAQGE 563
           AII T+  R Y+    ++    +MG D++    +E+   L     T   E  L  +  GE
Sbjct: 515 AIIETLFKRQYIRKDKKKIVPTQMGIDLIGVIRNET---LKSAEMTGQWERKLRQIEGGE 571