Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 896 a.a., type I DNA topoisomerase from Magnetospirillum magneticum AMB-1

 Score =  456 bits (1173), Expect = e-132
 Identities = 285/694 (41%), Positives = 389/694 (56%), Gaps = 90/694 (12%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64
           +V+VESPAKAKTINKYLG+ + V +S GHIRDLP                          
Sbjct: 3   VVVVESPAKAKTINKYLGSDFHVLASYGHIRDLP-------------------------- 36

Query: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124
           PK+ +         V PD G+   +E  P  E+ I+E+    K AD ++LATD DREGEA
Sbjct: 37  PKDGS---------VRPDEGFAMDWETDPKSERQIKEIVAAVKGADKLFLATDPDREGEA 87

Query: 125 IAWHLREAIGG----DDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           I+WH+R+ +           KRVVFNEITK A+ +A   P E+  + V+A  ARR LD +
Sbjct: 88  ISWHVRQVLEARKALKGVEVKRVVFNEITKSAVLDAMRNPREIHQELVDAYLARRALDYL 147

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VG+ +SP+LW K+    SAGRVQSVA++L+ ERE EI +F P EYW I AD  T K A +
Sbjct: 148 VGFTLSPVLWRKLPGSRSAGRVQSVALRLICERESEIESFKPREYWTIAADFLTPKGALL 207

Query: 241 R---FEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQ 297
                 +  +K + F   +EA A  A  K  ++ Y+V   E + T   P  PF TSTLQQ
Sbjct: 208 SAGLTHLGGKKLDKFDLSSEALARDAESKAASARYAVAAVERKRTRRNPYPPFTTSTLQQ 267

Query: 298 AASNRLGFGVKKTMMMAQRLYE--------AGYITYMRTDSTNLSADALDMARSYIEREF 349
            AS +L F   +TM +AQRLYE         G ITYMRTD   ++A+A+  AR+ I ++F
Sbjct: 268 EASRKLYFAAARTMQLAQRLYEGVDIGGETVGLITYMRTDGVQMAAEAIAGARAVIAQDF 327

Query: 350 GKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSG-MERDAERLYELIWRQFLAC 407
           GK Y+PEAP VY +K + AQEAHEAIRP+D+   P  ++  +++D  RLYELIW++ LA 
Sbjct: 328 GKVYVPEAPRVYKTKAKNAQEAHEAIRPTDLARRPEDVARYLDKDQLRLYELIWKRTLAS 387

Query: 408 QMPPAQYLSTSVTVAAGDFEL--RAKGRILKFDGYTRVLPQQSKPGEDD----VLPEMVQ 461
           QM  A+     V +A     +  RA G ++ FDG+ +V  +     +D+    +LP++ +
Sbjct: 388 QMAAAELDQVGVDIAGDQHGIVFRATGSVVVFDGFLKVYREDKDDSDDEDAEKLLPDVTE 447

Query: 462 GEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNR 521
            +A+    +   QHFT+PP RF+EASLVK ME+ GIGRPSTYA+I+S +Q+R YV L  R
Sbjct: 448 KDAMDRKAMRTEQHFTQPPPRFSEASLVKRMEELGIGRPSTYASILSVLQERNYVRLDQR 507

Query: 522 RFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFS--- 578
           RF  E  G +VT  L   F   ++Y FTAD+E  LDDV+ G  DW+ VLD F+ DFS   
Sbjct: 508 RFIPEDRGRLVTAFLESFFGRYVEYNFTADLENQLDDVSGGRDDWRKVLDRFWRDFSGAV 567

Query: 579 ---KKLQTAESSE------------DGMRANQPTMTNIPCKECGRPMMIRTASTGVFLGC 623
              K L+ A+  +            D    + P   + P    GR + ++    G F+GC
Sbjct: 568 DETKDLRVAQVLDALDELLGPHFFPDNGTGHDP--RSCPTCNAGR-LSLKLGKFGAFIGC 624

Query: 624 SGYSLPPKERCKATVNLVPGDEIAADDEGESESR 657
           S Y       C+ T  L  G       EGE E R
Sbjct: 625 SAY-----PECRFTRPLTTG------GEGEEEVR 647



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 714 CDKCGS-EMQLKTGRFGKFFGCT-NPACKNTRKLLKSGE 750
           C  C +  + LK G+FG F GC+  P C+ TR L   GE
Sbjct: 603 CPTCNAGRLSLKLGKFGAFIGCSAYPECRFTRPLTTGGE 641