Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 649 a.a., DNA topoisomerase III (EC 5.99.1.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  109 bits (272), Expect = 6e-28
 Identities = 128/548 (23%), Positives = 229/548 (41%), Gaps = 74/548 (13%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAI---GGDDTRYKRVVFNEIT 149
           P   K +  ++R    A  I  A D DREG+ +   + + +        + +R + N++ 
Sbjct: 79  PSVTKQLNVIKRFLHQAGEIIHAGDPDREGQLLVDEVLDYLQLPAEKRQQVRRCLINDLN 138

Query: 150 KKAIQEAFSQPGELDIDRVNAQQ----------ARRFLDRVVGYMVSPLLWAKIARG--- 196
            +A++ A        IDR+ A            AR   D + G  ++   +  + R    
Sbjct: 139 PQAVERA--------IDRLRANSDFVPLCVSALARARADWLYGINMTRA-YTILGRNAGY 189

Query: 197 ---LSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAFK 253
              LS GRVQ+  + LVV R+ EI  F+ ++++E+ A + T   A  RF    +  EA +
Sbjct: 190 QGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTP--ADERFTAIWQPSEACE 247

Query: 254 P--------LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGF 305
           P        L+   A   + ++      V    D+  S     PF  STLQ  A+ R G 
Sbjct: 248 PYQDEEGRLLHRPLAEHVVNRINGQPALVTSYNDKRESESAPLPFSLSTLQIEAAKRFGL 307

Query: 306 GVKKTMMMAQRLYEA-GYITYMRTDSTNLSADALDMARSYIE--REFGKQYLPEAPLVYG 362
             +  + + Q+LYE    ITY R+D   L  +     ++ +          LP+ P+V  
Sbjct: 308 SAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRQAVMNAISVHAPDLLPQ-PVVNP 366

Query: 363 S------KEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLS 416
                   +   +AH AI P    T  +    +  +  ++Y LI RQ+L    P A +  
Sbjct: 367 DTRNRCWDDKKVDAHHAIIP----TARSSSVHLTENEAKVYTLIARQYLMQFCPDAVFRK 422

Query: 417 TSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD--VLPEMVQGEALKLIQIDPSQ 474
             + +     +  AK R L   G+  +L  + +  E+D   LP + +G+ L   + +  +
Sbjct: 423 CVIELEIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVVE 482

Query: 475 HFTKPPARFTEASLV------------KEMEK-----RGIGRPSTYAAIISTIQDRGYVT 517
             T+PP  FT+A+L+            K+++K      G+G  +T A II  +  R ++T
Sbjct: 483 RQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRSFLT 542

Query: 518 LHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDF 577
              R  +S   G  +   L E  +       TA  E  L  +++ +  +++ +    G  
Sbjct: 543 KKGRYIHSTDAGKALIHSLPEMAAR---PDMTAHWESVLTQISEKQCRYQDFMQPLVGTL 599

Query: 578 SKKLQTAE 585
            + ++ A+
Sbjct: 600 YQLIEQAK 607