Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 876 a.a., DNA topoisomerase I, bacterial from Kangiella aquimarina DSM 16071

 Score = 1170 bits (3028), Expect = 0.0
 Identities = 581/874 (66%), Positives = 706/874 (80%), Gaps = 13/874 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           MGKSLVIVESPAKAKTINKYLG  ++VKSSIGHIRDLPT GS +     A +R + A   
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGKDFIVKSSIGHIRDLPT-GSQNKKPVDAKERARKAAAT 59

Query: 61  PALSPKEKARRQ-------LVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIY 113
             LSPKEKA+++       L ARMG++P+  W+A+YE+LPGKEKV+ EL++LAKDADTIY
Sbjct: 60  RKLSPKEKAKQKALKEKTALFARMGINPEKSWEAQYEVLPGKEKVLNELKKLAKDADTIY 119

Query: 114 LATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQA 173
           LATDLDREGEAIAWHLRE + GD++R+KRVVFNEITKKAIQ+AFS+PGELD++ VNAQQA
Sbjct: 120 LATDLDREGEAIAWHLRELLDGDESRFKRVVFNEITKKAIQQAFSKPGELDMNYVNAQQA 179

Query: 174 RRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLG 233
           RRFLDRVVG+MVSPLLW KI+RGLSAGRVQSVAV+L+VEREREIRAFIPEEYW+IHA+  
Sbjct: 180 RRFLDRVVGFMVSPLLWRKISRGLSAGRVQSVAVRLLVEREREIRAFIPEEYWDIHANTL 239

Query: 234 TAKNAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITS 293
           T     +R +V + +G+ F+P +E +   ALE LK+S Y VV RED+P  SK   PFITS
Sbjct: 240 TQSKDDLRLQVNKYQGKNFRPNSEEETNKALEVLKSSDYKVVTREDKPQKSKAPKPFITS 299

Query: 294 TLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQY 353
           TLQQAAS RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADA++  R YI+   G +Y
Sbjct: 300 TLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVESCRDYIKTNIGGEY 359

Query: 354 LPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQ 413
           LP+    Y SKEGAQEAHEAIRPSDV      L+GME+DAERLY+LIWRQF+ACQM PA+
Sbjct: 360 LPKEANSYSSKEGAQEAHEAIRPSDVAKKVGHLNGMEKDAERLYDLIWRQFVACQMLPAE 419

Query: 414 YLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPS 473
           +  TS+ V AGD+EL+A+GR+++FDG+T+VLP Q K  ED+ LP + +GE L+L +++P 
Sbjct: 420 FDVTSLKVQAGDYELKARGRVMRFDGWTKVLPMQKKNAEDEELPNVKEGEMLELKKLEPK 479

Query: 474 QHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVT 533
           QHFTKPPAR++EA+LVKE+EKRGIGRPSTYA+IISTIQDRGYV L NRRFY++K+G+IVT
Sbjct: 480 QHFTKPPARYSEAALVKELEKRGIGRPSTYASIISTIQDRGYVRLENRRFYAQKIGEIVT 539

Query: 534 ERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTA--ESSEDGM 591
           ERL ESF++L+DY FTA ME++LDD+A G ++WK  LDEFY +FSK+L+ A  E ++ GM
Sbjct: 540 ERLVESFNDLLDYSFTATMEKHLDDIASGRQNWKVTLDEFYDEFSKQLKKADEEEADGGM 599

Query: 592 RANQPTMTNIPCKEC-GRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADD 650
           R N+   T+I C++C    M IR ASTGVFLGC GYSLPPKERCK TVNL+PG+E  A D
Sbjct: 600 RRNEAVETDILCEKCKTNHMAIRNASTGVFLGCMGYSLPPKERCKNTVNLIPGEEFIAAD 659

Query: 651 EGESESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGP 710
           E E E+R L  K RC  C + MD YL+DE  KL+ICGNNPDC GYEIE+G ++IKGY+GP
Sbjct: 660 E-EEEARYLHDKKRCKKCNSTMDDYLVDENTKLYICGNNPDCDGYEIEKGEFKIKGYDGP 718

Query: 711 SLECDKCGSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVD 770
            LECDKCGS+MQLKTGRFGK+F CTN  CKNTRKLLK+G+ APPK D + MPEL+CEKVD
Sbjct: 719 VLECDKCGSDMQLKTGRFGKYFDCTNEDCKNTRKLLKNGQPAPPKADPIPMPELQCEKVD 778

Query: 771 DTYVLRDGASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPA 830
           D YVLRDGA+G+FLAAS+FP+NRETRAP V E++  K ++DPKY FL DAP KDPDG   
Sbjct: 779 DHYVLRDGAAGIFLAASKFPRNRETRAPAVDELITVKDKLDPKYKFLADAPLKDPDGNRT 838

Query: 831 VIRYSRKTKEQYVQS-EVDGKPTGWKAFYDGNAW 863
            +++SRKT +QYV   + DGK +GW AFY+   W
Sbjct: 839 FVKFSRKTGQQYVAGVKDDGKASGWTAFYENGKW 872