Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 641 a.a., DNA topoisomerase III from Erwinia amylovora T8

 Score =  100 bits (248), Expect = 4e-25
 Identities = 145/641 (22%), Positives = 259/641 (40%), Gaps = 98/641 (15%)

Query: 5   LVIVESPAKAKTINKYL-------------GNQYVVKSSIGHIRDLPTSGSASASKEPAA 51
           L I E P+ A+ I   L             G+  VV   +GH+ +           +P +
Sbjct: 3   LFIAEKPSLARAIADVLPKPHRRGDGYIACGSDQVVTWCVGHLLE---------QAQPDS 53

Query: 52  KRGKAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADT 111
             G+ A             R  +A + + P+   K + +  P   K +  ++ L   A  
Sbjct: 54  YNGRFA-------------RWSLADLPIVPE---KWRLQPRPSVAKQLNVIKGLLSQASV 97

Query: 112 IYLATDLDREGEAIAWHLREAI---GGDDTRYKRVVFNEITKKAIQEAFSQPGELD--ID 166
           +  A D DREG+ +   + + +        + +R + N++  +A++ A  +  E    I 
Sbjct: 98  VVHAGDPDREGQLLVDEVLDYLTLPAEKRAQVQRCLINDLNPQAVERAIGRLRENREFIP 157

Query: 167 RVNAQQARRFLDRVVGYMVSPLLWAKIARG------LSAGRVQSVAVKLVVEREREIRAF 220
              +  AR   D + G  ++   +  + R       LS GRVQ+  + LVV R+ +I  F
Sbjct: 158 LCVSALARARADWLYGINMTRA-YTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEDIENF 216

Query: 221 IPEEYWEIHADLGTAKNAKVRFEVAREKGEAFKP--------LNEAQAMAALEKLKASSY 272
           + ++++E+ A + T   A  RF    +  ++ +P        L+   A   + ++     
Sbjct: 217 VAKDFFEVRAHIVTP--ADERFVALWQPSDSCEPYQDDEGRLLHRPLAEHVVARIGGQPA 274

Query: 273 SVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDST 331
            V    D+  +     PF  S LQ  A  R G   +  +   QRLYE    ITY R+DS 
Sbjct: 275 HVTSYNDKRENETAPLPFSLSALQIEAGKRFGLSAQTVLDTCQRLYETHKLITYPRSDSR 334

Query: 332 NLSADALDMARSYIEREFGKQYLPE--APLVYGSKEGAQ-------EAHEAIRPSDVNTH 382
           +L  +    A  +        +LP    P  + S +  +       +AH AI P+   + 
Sbjct: 335 HLPDE--HFAGRHAVLNAINIHLPNLTPPGDFNSDQKNRCWDDKKVDAHHAIIPT-ARSS 391

Query: 383 PTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTR 442
              LS  ER   ++Y LI  Q+L    P A Y    + +A    +  AK R L   G+  
Sbjct: 392 QVALSDHER---QIYCLIATQYLMQFCPDAIYRKCVIELAIAGGKFVAKARFLAEAGWRA 448

Query: 443 VLPQQSKPGEDD--VLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLV----------- 489
           +L  + +  E+D   LP + +G+ L   + +  +  T+PP  FT+A+L+           
Sbjct: 449 LLGSKERDEENDGTPLPVVTRGDELLCERGEVLEKQTQPPRPFTDATLLSAMTGIARFVQ 508

Query: 490 -KEMEK-----RGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNL 543
            K+++K      G+G  +T A II  +  R ++    R  +S   G  +   L E  +  
Sbjct: 509 DKDLKKVLRATDGLGTEATRAGIIELLFKRSFLFKKGRYIHSSPAGRALIHSLPEMAAR- 567

Query: 544 MDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTA 584
                TA  E  L  +++ +  +++ +          +Q A
Sbjct: 568 --PDMTAHWESTLTKISEKQCRYQDFMSPLVETLHSLIQQA 606