Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 636 a.a., DNA topoisomerase III from Erwinia tracheiphila SCR3

 Score =  107 bits (268), Expect = 2e-27
 Identities = 132/526 (25%), Positives = 226/526 (42%), Gaps = 60/526 (11%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIG-GDDTRYK--RVVFNEIT 149
           P   K +  ++ L   A  +  A D DREG+ +   + + +    + R K  R + N++ 
Sbjct: 79  PSVAKQLGVIKGLLAQASEVIHAGDPDREGQLLVDEVLDYLTLSPEKRGKVLRCLINDLN 138

Query: 150 KKAIQEAFSQPGELD--IDRVNAQQARRFLDRVVGYMVSPLLWAKIARG------LSAGR 201
             A++ A ++  E    I    +  AR   D + G  ++   +  + R       LS GR
Sbjct: 139 PAAVERAVARLRENREFIPLCVSALARARADWLYGINMTRA-YTLLGRNAGYDGVLSVGR 197

Query: 202 VQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAFKP------- 254
           VQ+  + LVV R+ +I  FI ++++E+ A + T +N   RF    +  E+ +P       
Sbjct: 198 VQTPVLGLVVRRDEDIENFIAKDFFEVKAHIVTPQNE--RFVAHWQPSESCEPYQDEEGR 255

Query: 255 -LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMM 313
            L+   A   + ++      V+   DR  +  P  PF  S LQ  A+ R G   +  +  
Sbjct: 256 LLHRPLAEHVVTRINGQPAWVISYNDRRENETPPLPFSLSGLQIEAAKRFGLSAQTVLDT 315

Query: 314 AQRLYEA-GYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLVYGS-------KE 365
            Q+LYE    ITY R+DS  L  +      + +      Q     P  +          +
Sbjct: 316 CQKLYETHKLITYPRSDSRYLPEEHYAGRHAVLNAISAHQPELTYPADFDGDRKNRCWDD 375

Query: 366 GAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLA--CQMPPAQYLSTSVTVAA 423
              +AH AI P+   ++P +LS  ER+   +Y LI RQ+L   CQ    +     + +A 
Sbjct: 376 KKVDAHHAIIPT-ARSNPARLSENERN---IYYLIARQYLMQFCQEAVYRKCVIGLDIAG 431

Query: 424 GDFELRAKGRILKFDGYTRVLPQQSKPGEDD--VLPEMVQGEALKLIQIDPSQHFTKPPA 481
           G F   AK R L   G+  +L  + +  E+D   LP + +G+ L   + + +   T+PP 
Sbjct: 432 GKFV--AKARFLAEAGWRALLGGKERDEENDGTPLPVVAKGDELLCERGEVAAKQTQPPR 489

Query: 482 RFTEASLV------------KEMEK-----RGIGRPSTYAAIISTIQDRGYVTLHNRRFY 524
            FT+ASL+            KE++K      G+G  +T A II  +  R ++    R  +
Sbjct: 490 PFTDASLLSAMTGIARFVQDKELKKVLRATDGLGTEATRAGIIELLFKRTFLFKKGRYIH 549

Query: 525 SEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVL 570
           S   G  +   L E  +       TA  E  L  +++ E  ++  +
Sbjct: 550 SSPAGRALIHSLPEMAAR---PDMTAHWESTLTKISEKECSYQGFM 592