Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 635 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Enterobacter asburiae PDN3

 Score =  101 bits (251), Expect = 2e-25
 Identities = 125/551 (22%), Positives = 223/551 (40%), Gaps = 76/551 (13%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLR---EAIGGDDTRYKRVVFNEIT 149
           P   K +  ++R   +A  I  A D DREG+ +   +    E       + +R + N++ 
Sbjct: 79  PSVTKQLNVIKRFLHEAAEIVHAGDPDREGQLLVDEVLDYLELAPEKRQQVQRCLINDLN 138

Query: 150 KKAIQEAFSQ----------------PGELD-IDRVNAQQARRFLDRVVGYMVSPLLWAK 192
            +A++ A S+                    D +  +N  +A   L R  GY         
Sbjct: 139 PQAVERAISRLRANSEFIPLCVSALARARADWLYGINMTRAYTILGRNAGYQGV------ 192

Query: 193 IARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAF 252
               LS GRVQ+  + LVV R+ +I  F+ ++++E+ A + T K+   RF    +  +A 
Sbjct: 193 ----LSVGRVQTPVLGLVVRRDEDIENFVAKDFFEVKAHIVTPKDE--RFTAVWQPSDAC 246

Query: 253 KP--------LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLG 304
           +         L+   A   + ++      V    D+  S     PF  S LQ  A+ + G
Sbjct: 247 ESYQDEEGRLLHRPLADHVVNRITGQPAIVTSYNDKRESEPAPLPFSLSALQIEAAKKFG 306

Query: 305 FGVKKTMMMAQRLYEA-GYITYMRTDSTNLSADALDMARSYIER--EFGKQYLPEAPLVY 361
              +  + + Q+LYE    ITY R+DS  L  +      S +          LP+ P V 
Sbjct: 307 LSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHSVMNAIGVHAPDLLPQ-PAVN 365

Query: 362 GS------KEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL 415
                    +   +AH AI P    T       +  +  ++Y LI RQ+L    P A + 
Sbjct: 366 PDTHNRCWDDKKVDAHHAIIP----TARASSVNLTDNEAKVYNLIARQYLMQFCPDAVFR 421

Query: 416 STSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD--VLPEMVQGEALKLIQIDPS 473
              + +     +  AK R L   G+  +L  + +  E+D   LP + + + L   + +  
Sbjct: 422 KCVIELEIAKGKFVAKARFLAEAGWRTLLGNKERDEENDGTPLPVVAKDDELLCEKGEVV 481

Query: 474 QHFTKPPARFTEASLV------------KEMEK-----RGIGRPSTYAAIISTIQDRGYV 516
           +  T+PP  FT+A+L+            K+++K      G+G  +T A II  +  RG++
Sbjct: 482 ERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFL 541

Query: 517 TLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGD 576
               R  +S + G  +   L E  +       TA  E  L  +++ +  +++ +    G 
Sbjct: 542 EKKGRYIHSTEPGRALIHSLPELAAR---PDMTAHWESVLTQISEKQCRYQDFMQPLVGT 598

Query: 577 FSKKLQTAESS 587
             + +  A S+
Sbjct: 599 LYQLIDQARST 609