Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 865 a.a., DNA topoisomerase I, bacterial from Enterobacter asburiae PDN3

 Score = 1145 bits (2961), Expect = 0.0
 Identities = 567/872 (65%), Positives = 684/872 (78%), Gaps = 10/872 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           MGK+LVIVESPAKAKTINKYLGN YVVKSS+GHIRDLPTSGSAS       K   +    
Sbjct: 1   MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASK------KSADSTSTK 54

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
            A  PK+  R  LV RMGV+P H W A+YE+LPGKEKV+ EL++LA+ AD IYLATDLDR
Sbjct: 55  GAKKPKKDERSALVNRMGVNPWHNWDAQYEVLPGKEKVVNELKQLAEKADHIYLATDLDR 114

Query: 121 EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           EGEAIAWHLRE IGGDD RY RVVFNEITK AI++AF +PGEL+IDRVNAQQARRF+DRV
Sbjct: 115 EGEAIAWHLREVIGGDDKRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRV 174

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VGYMVSPLLW KIARGLSAGRVQSVAV+LVVEREREI+AF+PEE+WE+ A++ T     +
Sbjct: 175 VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDANVTTPGGDAL 234

Query: 241 RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS 300
             +V+    + F+P N  Q MAA+  L+ + Y V++RED+PTSSKP APFITSTLQQAAS
Sbjct: 235 PLQVSHHNDKPFRPENRDQTMAAVALLEKARYKVLEREDKPTSSKPGAPFITSTLQQAAS 294

Query: 301 NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV 360
            RLG+GVKKTMMMAQRLYEAGYITYMRTDSTNLS DA++M R YI   FGK+YLPE+   
Sbjct: 295 TRLGYGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESANQ 354

Query: 361 YGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT 420
           Y SKE +QEAHEAIRPSDV+     L  ME DA++LY+LIWRQF+ACQM PA+Y ST++T
Sbjct: 355 YASKENSQEAHEAIRPSDVSVLAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLT 414

Query: 421 VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPP 480
           V AGDF L+A+GRIL+FDG+T+V+P   K  ED  LP + +G+ L L+ + P+QHFTKPP
Sbjct: 415 VGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDELSLVDLVPAQHFTKPP 474

Query: 481 ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF 540
           ARF+EASLVKE+EKRGIGRPSTYA+IISTIQDRGYV + NRRFY+EKMG+IVT+RL  +F
Sbjct: 475 ARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEANF 534

Query: 541 SNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAES--SEDGMRANQPTM 598
             LM+Y FTA ME++LD VA  + +WK VLD F+ DF+ +L+ AE    E GM  NQ  +
Sbjct: 535 RELMNYDFTAQMEDSLDQVASHQAEWKKVLDSFFSDFTDQLEKAEKDPEEGGMLPNQMVL 594

Query: 599 TNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEG-ESESR 657
           T+I C  CGR M IRTA+TGVFLGCSGY+L PKERCK T+NLVP +E+    EG ++E+ 
Sbjct: 595 TSIDCPTCGRKMGIRTATTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETN 654

Query: 658 VLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKC 717
            L  K RC  C TAMD+YL+D K KLH+CGNNP C GYEIEEG +RIKGY+GP +EC+KC
Sbjct: 655 ALRAKRRCKKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKC 714

Query: 718 GSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRD 777
           GSEM LK GRFGK+  CTN  CKNTRK+L++GE APPK D V +PEL CEK D  +VLRD
Sbjct: 715 GSEMHLKMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRD 774

Query: 778 GASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRK 837
           GA+G+FLAA+ FPK+RETRAPLV E+   +  +  K  +L DAPQ+DP+G   V+R+SRK
Sbjct: 775 GAAGVFLAANTFPKSRETRAPLVEELHRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRK 834

Query: 838 TKEQYVQSEVDGKPTGWKAFYDGNAWKVEDKR 869
           TK+QYV +E +GK TGW AF+    W VE K+
Sbjct: 835 TKQQYVAAEKEGKATGWSAFFVDGKW-VEGKK 865