Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 180 a.a., Uncharacterized protein YrdD from Escherichia coli ECRC101

 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 714 CDKCGSEMQLKTGRFGKFFGCTN-PACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDT 772
           C KCG+E+ +++G+ G F GC+  PAC   R L  S +    K+    +    C      
Sbjct: 15  CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV----LEGQVCPACGAN 70

Query: 773 YVLRDGASGLFLAASQFPKNRET 795
            VLR G  G+F+    +P+   T
Sbjct: 71  LVLRQGRFGMFIGCINYPECEHT 93



 Score = 40.8 bits (94), Expect = 6e-08
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 714 CDKCGSEMQLKTGRFGKFFGCTN-PACKNTRKLLKSGEAA 752
           C  CG+ + L+ GRFG F GC N P C++T  + K  E A
Sbjct: 64  CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)

Query: 600 NIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL 659
           N  C +CG  ++IR+   G FLGCS Y  P  +  +   +   G  +          +VL
Sbjct: 12  NESCPKCGAELVIRSGKHGPFLGCSQY--PACDYVRPLKSSADGHIV----------KVL 59

Query: 660 LGKHRCPICATAMDAYLLDEKHKLHI-CGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCG 718
            G+  CP C    +  L   +  + I C N P+C   E+      I   +  ++ C +C 
Sbjct: 60  EGQ-VCPACGA--NLVLRQGRFGMFIGCINYPECEHTEL------IDKPDETAITCPQCR 110

Query: 719 S-EMQLKTGRFGK-FFGCTN-PACK 740
           +  +  +  R+GK F  C   P C+
Sbjct: 111 TGHLVQRRSRYGKTFHSCDRYPECQ 135