Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola ME23

 Score = 1157 bits (2992), Expect = 0.0
 Identities = 572/872 (65%), Positives = 691/872 (79%), Gaps = 8/872 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           MGK+LVIVESPAKAKTINKYLGN +VVKSS+GH+RDLPTSGS SASK+ A   G+ A +A
Sbjct: 1   MGKALVIVESPAKAKTINKYLGNDFVVKSSVGHVRDLPTSGSGSASKKSAEANGEKAKKA 60

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
                K+  +  LV RMGVDP  GW+A YEILPGKEKV+ EL+ LA++AD +YLATDLDR
Sbjct: 61  V----KKDEKTALVNRMGVDPYRGWQAHYEILPGKEKVVSELKALAQNADHVYLATDLDR 116

Query: 121 EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           EGEAIAWHLRE IGGDD R+ RVVFNEITK AI++AF  PGEL+I+RVNAQQARRF+DRV
Sbjct: 117 EGEAIAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFENPGELNINRVNAQQARRFMDRV 176

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VGYMVSPLLW KIARGLSAGRVQSVAV+LVVEREREI+AF+PEEYWE+HADL       +
Sbjct: 177 VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANPEIAL 236

Query: 241 RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS 300
           + +V    G+ F+P+N+AQ  AA+  L+ + Y V +RED+PTSSKP APFITSTLQQAAS
Sbjct: 237 QMQVTHHNGKPFRPVNQAQTQAAVSLLEKARYVVAEREDKPTSSKPGAPFITSTLQQAAS 296

Query: 301 NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV 360
            RLGFGVKKTMMMAQRLYEAG+ITYMRTDSTNLS DAL MAR YI  EFGK+YLPEAP +
Sbjct: 297 TRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMARDYIHDEFGKRYLPEAPNL 356

Query: 361 YGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT 420
           Y SKE +QEAHEAIRPSDV     +L  ME DA++LY+LIWRQF+ACQM PAQY ST++ 
Sbjct: 357 YTSKENSQEAHEAIRPSDVKVQADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLV 416

Query: 421 VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPP 480
           V+AGD++LRAKGR L+FDG+T+V+P   K  ED  LP +  G++L L ++ PSQHFTKPP
Sbjct: 417 VSAGDYQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPAIDVGQSLSLEKLSPSQHFTKPP 476

Query: 481 ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF 540
           AR++EASLVKE+EKRGIGRPSTYAAIISTIQDRGYV + NRRFY+EKMG+IVT+RL ++F
Sbjct: 477 ARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNF 536

Query: 541 SNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTA--ESSEDGMRANQPTM 598
             LM+Y FTA ME  LD VA  + +WK VLDEF+ +FSK+L+TA  E ++ GM+ NQ  +
Sbjct: 537 RELMNYDFTARMENRLDLVANSQAEWKGVLDEFFAEFSKQLETAELEPNDGGMKPNQMVL 596

Query: 599 TNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEG-ESESR 657
           T+I C  CGR M IRTASTGVFLGCSGY+L PKERCK T+NL+P  E+    EG E+E+ 
Sbjct: 597 TSIDCPTCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLIPEAEVLNVLEGDEAETN 656

Query: 658 VLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKC 717
            L  + RC  C TAMD+YL+D + KLH+CGNNP C GYEIE+G +R+KGY+GP +EC+KC
Sbjct: 657 ALRARRRCSKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEQGEFRLKGYDGPVVECEKC 716

Query: 718 GSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRD 777
            SEM LK GRFGK+  CTN +C NTRK+L++GE APPK D V +PEL CEK D  +VLRD
Sbjct: 717 SSEMHLKMGRFGKYMACTNESCGNTRKILRNGEVAPPKEDPVPLPELLCEKSDAYFVLRD 776

Query: 778 GASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRK 837
           GA+G+FLAA+ FPK+RETRAPLV E+V     +  K  +L +AP  D +G   ++R+SRK
Sbjct: 777 GAAGVFLAANTFPKSRETRAPLVAELVRFCDRLPEKLRYLAEAPVTDAEGNKTLVRFSRK 836

Query: 838 TKEQYVQSEVDGKPTGWKAFYDGNAWKVEDKR 869
           TK+QYV SE +GK TGW AFY    W VE  R
Sbjct: 837 TKQQYVSSEKEGKATGWSAFYVDGKW-VESSR 867