Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 641 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

 Score =  109 bits (273), Expect = 5e-28
 Identities = 128/550 (23%), Positives = 224/550 (40%), Gaps = 74/550 (13%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTR---YKRVVFNEIT 149
           P   K +  +++L   AD I  A D DREG+ +   + E +   + +    +R + N++ 
Sbjct: 79  PSVSKQLNVIKKLLTQADEIIHAGDPDREGQLLVDEVLEYLALSEEKRQHVRRCLINDLN 138

Query: 150 KKAIQEAFSQPGE-----------LDIDR------VNAQQARRFLDRVVGYMVSPLLWAK 192
            +A++ A S+  E           L   R      +N  +A   L R  GY         
Sbjct: 139 PQAVERAVSRMRENREFVPLCVSALARSRADWLYGINMTRAYTLLGRNAGY--------- 189

Query: 193 IARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAF 252
               LS GRVQ+  + LVV R+ EI  F+P +Y+E+ A + T   A  RF    +  E+ 
Sbjct: 190 -EGVLSVGRVQTPVLGLVVRRDEEIDNFVPRDYFEVKAHIVTP--AGERFVALWQPSESC 246

Query: 253 KP--------LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLG 304
           +P        L+   A   ++++      V    D+  S     P+  S LQ  A+ R G
Sbjct: 247 EPYQDEEGRLLHRPLAEHVVKRIDGQPAWVSAYNDKRESETAPLPYSLSALQIEAAKRFG 306

Query: 305 FGVKKTMMMAQRLYEA-GYITYMRTDSTNLSADALDMARSYIEREFGKQ-YLPEAPLVYG 362
              ++ + + QRLYE    ITY R+D   L  +     ++ +      Q  L   P V  
Sbjct: 307 LSAQQVLDVCQRLYETHKLITYPRSDCRYLPEEHFAGRQAVLNAIAAHQPDLLAQPAVDP 366

Query: 363 SK------EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLS 416
            +      +   +AH AI P    T  +  + +     ++Y LI RQ+L      A +  
Sbjct: 367 ERRNRCWDDSKVDAHHAIIP----TARSARTSLTESESQVYGLIARQYLMQFCADAVFRK 422

Query: 417 TSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD--VLPEMVQGEALKLIQIDPSQ 474
             + +     +  AK R L   G+  +L  + +  E++   LP + +G+ L   + +  +
Sbjct: 423 CVIDLDIAGGKFVAKARFLAEAGWRTLLGHKERDEENEGTPLPVVAKGDELLCERGEVVE 482

Query: 475 HFTKPPARFTEASLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVT 517
             T+PP  FT+A+L+  M                 E  G+G  +T A II  +  R ++ 
Sbjct: 483 RQTQPPRHFTDATLLSAMTGIARFVQDKALKKILRETDGLGTEATRAGIIELLFKRAFLI 542

Query: 518 LHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDF 577
              R  +S + G  +   L    ++      TA  E  L  +++    +++ +       
Sbjct: 543 KKGRYIHSTEAGKALIHALPPMAAH---PDMTAHWEATLTQISEKHCRYQDFMQPLTQSL 599

Query: 578 SKKLQTAESS 587
            + +Q A  S
Sbjct: 600 HELIQQARQS 609