Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 780 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  129 bits (325), Expect = 5e-34
 Identities = 147/613 (23%), Positives = 249/613 (40%), Gaps = 109/613 (17%)

Query: 81  PDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIA-WHLREAIGGDDTR 139
           PD+G K +++I+          R L   A  +    D  +EGE I  W L++A       
Sbjct: 77  PDNGVKKQFKII----------RDLVNKAQVVINCGDAGQEGELIQRWVLKQA--NYQGA 124

Query: 140 YKRVVFNEITKKAIQEAFS--QPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIA--- 194
            +R+  + +T ++IQ  F   +P E   +   A  +R   D ++G   + L   K     
Sbjct: 125 VQRLWISSLTTESIQAGFENLKPAEEFDNLYYAGSSRAIGDWLLGMNATRLYTLKYGGYK 184

Query: 195 RGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADL--GTAKNAKVRFEVAREKGEAF 252
           + LS GRVQ+  + ++V R +EI  F PE YWE+       T  + + +F + +E GEA 
Sbjct: 185 QVLSIGRVQTPTLAMLVNRHQEIEQFKPEPYWELQTTYRDTTFHSTEGKF-LKKEDGEAL 243

Query: 253 KPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMM 312
                      L ++      +   + +         F  ++LQ   +N+       T+ 
Sbjct: 244 -----------LGQITGKDLFITAIDQKEGKEYAPKLFDLTSLQVYCNNKFNLTADNTLK 292

Query: 313 MAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLVYGSKEGAQEAHE 372
             QRLYE   +TY R D+T L  D      S I +  G+ +   APL+    +  +++ +
Sbjct: 293 TVQRLYELKVVTYPRVDTTFLPNDMYPKI-SGILKGLGQYHSFTAPLL---AKKIRKSPK 348

Query: 373 AIRPSDVNTHPTKL-SGMERD----AERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFE 427
                 V  H   + +G E+      +++Y++I R+FLA   P  +   T VT       
Sbjct: 349 VFNDKKVTDHHAIIPTGEEKQLGHTEQKVYDIIVRRFLAAFYPDCKVAKTQVTGEIEQTT 408

Query: 428 LRAKGRILKFDGYTRVLPQQSKPGEDD----------VLPEMVQGE------ALKLIQID 471
             AKG+ +  +G+  +  + +K  +DD          +LP   +GE       LK     
Sbjct: 409 FLAKGKEILEEGWRALFAKDNKKEKDDGDSKEDEEEGILPTFEKGEHGPHHPTLK----- 463

Query: 472 PSQHFTKPPARFTEASLVKEME----------------KRGIGRPSTYAAIISTIQDRGY 515
             +  TKPP  +TEASL++ ME                  GIGRPST A+II T+  R Y
Sbjct: 464 --EKITKPPKNYTEASLLRAMETAGKQVEDDELRDLMKANGIGRPSTRASIIETLFRRKY 521

Query: 516 VTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQG------------- 562
           +    +     +MG  +   +      L     T   E+ L ++ +G             
Sbjct: 522 IERRKKLVVPTEMGIQLIGTIQNEL--LKSAELTGQWEKQLKEIEEGAFSAIQFIANMKK 579

Query: 563 -----------ERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMTNIPCKECGRPMM 611
                      E +   +   F  D  KK   + S +   +A    ++ + C +CG+  +
Sbjct: 580 MVAELVSEVKQEHNKPRLASPFASDNQKKSTPSASKKKTSKAASKGLSEVTCPKCGQGNI 639

Query: 612 IRTASTGVFLGCS 624
           I+  +     GCS
Sbjct: 640 IKGKTA---YGCS 649