Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 693 a.a., Topoisomerase IA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  124 bits (311), Expect = 2e-32
 Identities = 157/647 (24%), Positives = 272/647 (42%), Gaps = 84/647 (12%)

Query: 6   VIVESPAKAKTINKYLG-----------NQYVVKSSIGHIRDLPTSGSASASKEPAAKRG 54
           VI E P+ A+ I   LG           N Y V  + GH+  L          E     G
Sbjct: 4   VIAEKPSVAREIASLLGATEKKEGHLTGNGYFVTWAFGHLVGL-------GMPEDYGITG 56

Query: 55  KAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYL 114
                 P L         L+A   V  D G    Y    G  K ++ + +L   +D I +
Sbjct: 57  FDKAALPILP-----HPFLLAVRKVKKDKG----YTTDAGAIKQLKIIEQLFNRSDGIIV 107

Query: 115 ATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFS--QPGELDIDRVNAQQ 172
           ATD  REGE I  ++ E +      ++R+  + +T+KAI++ F   + G+       A Q
Sbjct: 108 ATDAGREGELIFRYIYEYLKCIKP-FQRLWISSLTEKAIKQGFDNLKDGKEFDGLYQAAQ 166

Query: 173 ARRFLDRVVGYMVSPLLWAKIARGL-SAGRVQSVAVKLVVEREREIRAFIPEEYWEIHAD 231
            R   D +VG   +  L      G+ S GRVQ+  + L+  R  E + F  ++YW+I   
Sbjct: 167 GRSRADWLVGINATQALSIAAGNGVYSLGRVQTPTLALICRRYLENKNFSVQKYWQIQ-- 224

Query: 232 LGTAKNAKVRFEVAREKGEAFKPLNEAQAMAALEKLK--ASSYSVVKREDRPTSSKPSAP 289
           L   K       +++ K +     N+  A   L+ ++   ++ +V   E +  + +P   
Sbjct: 225 LSHTKEFIEFKSLSKNKWD-----NQKLAKDTLKSIERNGNTAAVTSVETKNVTEQPPLL 279

Query: 290 FITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAL----DMARSYI 345
           F  + LQ+  + +L    ++T+ +AQ LYE  +ITY RT S  +  D      ++ R+  
Sbjct: 280 FDLTGLQKEVNKKLNLSAEETLKIAQSLYEKKFITYPRTGSKYIPEDMWTEIPNLIRALQ 339

Query: 346 EREFGKQYLPEAPLVYGSKEGAQEA----HEAIRPSDVNTHPTKLSGMERDAERLYELIW 401
           +R+  KQ + +      +K    +     H  +  +D  T P+ L+  E     +Y++I 
Sbjct: 340 DRDTCKQAVAKVKWGRFNKRIVNDLRVTDHHGLLTTD--TIPSALNAKE---NAVYDMIA 394

Query: 402 RQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRV----LPQQSKPGEDDVLP 457
            + L          +T +T+ A  ++   KG  +   G+  +        ++P ED  LP
Sbjct: 395 FRLLEAISGACTKEATHITLQALHYDFTTKGCKVLEPGWRSIKGNFTDDDAEPIED--LP 452

Query: 458 EMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKR----------------GIGRPS 501
           ++ +G+ LK+ Q    +  TKPP  +TEA L+  ME                  GIG P+
Sbjct: 453 DIKEGDVLKIKQAAVLEKKTKPPVLYTEAGLLSAMETAGKDIKNEEERKALQNIGIGTPA 512

Query: 502 TYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQ 561
           T AAII T+  R Y+    +     + G  V E + +    + D   TA+ E  L  +  
Sbjct: 513 TRAAIIETLFTRNYIQREKKSLIPTEKGLQVYELVKD--RKIADVAMTAEWELALQKIET 570

Query: 562 GERD---WKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMTNIPCKE 605
            E +   ++  ++ +    + +L     ++D    N P +    CK+
Sbjct: 571 SEMNAIAFQKEMEAYTKSITGELLQTSIAKD----NSPELVCPKCKK 613